Dr.seq2: A quality control and analysis pipeline for parallel single cell transcriptome and epigenome data

nork Zhao, Chengchen, Hu, Sheng’en, Huo, Xiao, Zhang, Yong
Argitaratua izan da PLoS One (2017)

CAM: A quality control pipeline for MNase-seq data

nork Hu, Sheng’en, Chen, Xiaolan, Liao, Ji, Chen, Yiqing, Zhao, Chengchen, Zhang, Yong
Argitaratua izan da PLoS One (2017)

Ectopic Tcf1 expression instills a stem-like program in exhausted CD8(+) T cells to enhance viral and tumor immunity

nork Shan, Qiang, Hu, Sheng’en, Chen, Xia, Danahy, Derek B., Badovinac, Vladimir P., Zang, Chongzhi, Xue, Hai-Hui
Argitaratua izan da Cell Mol Immunol (2020)

Analysis of optimized DNase-seq reveals intrinsic bias in transcription factor footprint identification

nork He, Housheng Hansen, Meyer, Clifford A., Hu, Sheng'en Shawn, Chen, Mei-Wei, Zang, Chongzhi, Liu, Yin, Rao, Prakash K., Fei, Teng, Xu, Han, Long, Henry, Liu, X. Shirley, Brown, Myles
Argitaratua 2013

CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human

nork Qin, Bo, Zhou, Meng, Ge, Ying, Taing, Len, Liu, Tao, Wang, Qian, Wang, Su, Chen, Junsheng, Shen, Lingling, Duan, Xikun, Hu, Sheng'en, Li, Wei, Long, Henry, Zhang, Yong, Liu, X. Shirley
Argitaratua 2012

High-dimensional genomic data bias correction and data integration using MANCIE

nork Zang, Chongzhi, Wang, Tao, Deng, Ke, Li, Bo, Hu, Sheng'en, Qin, Qian, Xiao, Tengfei, Zhang, Shihua, Meyer, Clifford A., He, Housheng Hansen, Brown, Myles, Liu, Jun S., Xie, Yang, Liu, X. Shirley
Argitaratua izan da Nat Commun (2016)

Comparative analysis of metazoan chromatin organization

nork Ho, Joshua W. K., Jung, Youngsook L., Liu, Tao, Alver, Burak H., Lee, Soohyun, Ikegami, Kohta, Sohn, Kyung-Ah, Minoda, Aki, Tolstorukov, Michael Y., Appert, Alex, Parker, Stephen C. J., Gu, Tingting, Kundaje, Anshul, Riddle, Nicole C., Bishop, Eric, Egelhofer, Thea A., Hu, Sheng’en Shawn, Alekseyenko, Artyom A., Rechtsteiner, Andreas, Asker, Dalal, Belsky, Jason A., Bowman, Sarah K., Chen, Q. Brent, Chen, Ron A-J, Day, Daniel S., Dong, Yan, Dose, Andrea C., Duan, Xikun, Epstein, Charles B., Ercan, Sevinc, Feingold, Elise A., Ferrari, Francesco, Garrigues, Jacob M., Gehlenborg, Nils, Good, Peter J., Haseley, Psalm, He, Daniel, Herrmann, Moritz, Hoffman, Michael M., Jeffers, Tess E., Kharchenko, Peter V., Kolasinska-Zwierz, Paulina, Kotwaliwale, Chitra V., Kumar, Nischay, Langley, Sasha A., Larschan, Erica N., Latorre, Isabel, Libbrecht, Maxwell W., Lin, Xueqiu, Park, Richard, Pazin, Michael J., Pham, Hoang N., Plachetka, Annette, Qin, Bo, Schwartz, Yuri B., Shoresh, Noam, Stempor, Przemyslaw, Vielle, Anne, Wang, Chengyang, Whittle, Christina M., Xue, Huiling, Kingston, Robert E., Kim, Ju Han, Bernstein, Bradley E., Dernburg, Abby F., Pirrotta, Vincenzo, Kuroda, Mitzi I., Noble, William S., Tullius, Thomas D., Kellis, Manolis, MacAlpine, David M., Strome, Susan, Elgin, Sarah C. R., Liu, Xiaole Shirley, Lieb, Jason D., Ahringer, Julie, Karpen, Gary H., Park, Peter J.
Argitaratua izan da Nature (2014)