Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences

nork Zhang, Jianwei, Kudrna, Dave, Mu, Ting, Li, Weiming, Copetti, Dario, Yu, Yeisoo, Goicoechea, Jose Luis, Lei, Yang, Wing, Rod A.
Argitaratua izan da Bioinformatics (2016)

Fluorescence In Situ Hybridization and Optical Mapping to Correct Scaffold Arrangement in the Tomato Genome

nork Shearer, Lindsay A., Anderson, Lorinda K., de Jong, Hans, Smit, Sandra, Goicoechea, José Luis, Roe, Bruce A., Hua, Axin, Giovannoni, James J., Stack, Stephen M.
Argitaratua 2014

Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping

nork Wang, Xiaoming, Kudrna, David A., Pan, Yonglong, Wang, Hao, Liu, Lin, Lin, Haiyan, Zhang, Jianwei, Song, Xiang, Goicoechea, Jose Luis, Wing, Rod A., Zhang, Qifa, Luo, Meizhong
Argitaratua 2014

An Integrated Physical, Genetic and Cytogenetic Map of Brachypodium distachyon, a Model System for Grass Research

nork Febrer, Melanie, Goicoechea, Jose Luis, Wright, Jonathan, McKenzie, Neil, Song, Xiang, Lin, Jinke, Collura, Kristi, Wissotski, Marina, Yu, Yeisoo, Ammiraju, Jetty S. S., Wolny, Elzbieta, Idziak, Dominika, Betekhtin, Alexander, Kudrna, Dave, Hasterok, Robert, Wing, Rod A., Bevan, Michael W.
Argitaratua 2010

Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

nork Kim, HyeRan, Hurwitz, Bonnie, Yu, Yeisoo, Collura, Kristi, Gill, Navdeep, SanMiguel, Phillip, Mullikin, James C, Maher, Christopher, Nelson, William, Wissotski, Marina, Braidotti, Michele, Kudrna, David, Goicoechea, José Luis, Stein, Lincoln, Ware, Doreen, Jackson, Scott A, Soderlund, Carol, Wing, Rod A
Argitaratua 2008

Dynamic Evolution of Oryza Genomes Is Revealed by Comparative Genomic Analysis of a Genus-Wide Vertical Data Set

nork Ammiraju, Jetty S.S., Lu, Fei, Sanyal, Abhijit, Yu, Yeisoo, Song, Xiang, Jiang, Ning, Pontaroli, Ana Clara, Rambo, Teri, Currie, Jennifer, Collura, Kristi, Talag, Jayson, Fan, Chuanzhu, Goicoechea, Jose Luis, Zuccolo, Andrea, Chen, Jinfeng, Bennetzen, Jeffrey L., Chen, Mingsheng, Jackson, Scott, Wing, Rod A.
Argitaratua 2008

The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research

nork Song, Xiang, Goicoechea, Jose Luis, Ammiraju, Jetty S. S., Luo, Meizhong, He, Ruifeng, Lin, Jinke, Lee, So-Jeong, Sisneros, Nicholas, Watts, Tom, Kudrna, David A., Golser, Wolfgang, Ashley, Elizabeth, Collura, Kristi, Braidotti, Michele, Yu, Yeisoo, Matzkin, Luciano M., McAllister, Bryant F., Markow, Therese Ann, Wing, Rod A.
Argitaratua 2011

Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum

nork Hass-Jacobus, Barbara L, Futrell-Griggs, Montona, Abernathy, Brian, Westerman, Rick, Goicoechea, Jose-Luis, Stein, Joshua, Klein, Patricia, Hurwitz, Bonnie, Zhou, Bin, Rakhshan, Fariborz, Sanyal, Abhijit, Gill, Navdeep, Lin, Jer-Young, Walling, Jason G, Luo, Mei Zhong, Ammiraju, Jetty Siva S, Kudrna, Dave, Kim, Hye Ran, Ware, Doreen, Wing, Rod A, Miguel, Phillip San, Jackson, Scott A
Argitaratua 2006

Physical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History

nork Wei, Fusheng, Coe, Ed, Nelson, William, Bharti, Arvind K, Engler, Fred, Butler, Ed, Kim, HyeRan, Goicoechea, Jose Luis, Chen, Mingsheng, Lee, Seunghee, Fuks, Galina, Sanchez-Villeda, Hector, Schroeder, Steven, Fang, Zhiwei, McMullen, Michael, Davis, Georgia, Bowers, John E, Paterson, Andrew H, Schaeffer, Mary, Gardiner, Jack, Cone, Karen, Messing, Joachim, Soderlund, Carol, Wing, Rod A
Argitaratua 2007

Young inversion with multiple linked QTLs under selection in a hybrid zone

nork Lee, Cheng-Ruei, Wang, Baosheng, Mojica, Julius, Mandáková, Terezie, Prasad, Kasavajhala V. S. K., Goicoechea, Jose Luis, Perera, Nadeesha, Hellsten, Uffe, Hundley, Hope N., Johnson, Jenifer, Grimwood, Jane, Barry, Kerrie, Fairclough, Stephen, Jenkins, Jerry W., Yu, Yeisoo, Kudrna, Dave, Zhang, Jianwei, Talag, Jayson, Golser, Wolfgang, Ghattas, Katherine, Schranz, M. Eric, Wing, Rod, Lysak, Martin A., Schmutz, Jeremy, Rokhsar, Daniel S., Mitchell-Olds, Thomas
Argitaratua izan da Nat Ecol Evol (2017)

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

nork Zhang, Jianwei, Chen, Ling-Ling, Sun, Shuai, Kudrna, Dave, Copetti, Dario, Li, Weiming, Mu, Ting, Jiao, Wen-Biao, Xing, Feng, Lee, Seunghee, Talag, Jayson, Song, Jia-Ming, Du, Bogu, Xie, Weibo, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A., Zhang, Qifa
Argitaratua izan da Sci Data (2016)

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

nork Wang, Muhua, Yu, Yeisoo, Haberer, Georg, Marri, Pradeep Reddy, Fan, Chuanzhu, Goicoechea, Jose Luis, Zuccolo, Andrea, Song, Xiang, Kudrna, Dave, Ammiraju, Jetty S S, Cossu, Rosa Maria, Maldonado, Carlos, Chen, Jinfeng, Lee, Seunghee, Sisneros, Nick, de Baynast, Kristi, Golser, Wolfgang, Wissotski, Marina, Kim, Woojin, Sanchez, Paul, Ndjiondjop, Marie-Noelle, Sanni, Kayode, Long, Manyuan, Carney, Judith, Panaud, Olivier, Wicker, Thomas, Machado, Carlos A, Chen, Mingsheng, Mayer, Klaus F X, Rounsley, Steve, Wing, Rod A
Argitaratua izan da Nat Genet (2014)

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

nork Zuccolo, Andrea, Bowers, John E, Estill, James C, Xiong, Zhiyong, Luo, Meizhong, Sebastian, Aswathy, Goicoechea, José Luis, Collura, Kristi, Yu, Yeisoo, Jiao, Yuannian, Duarte, Jill, Tang, Haibao, Ayyampalayam, Saravanaraj, Rounsley, Steve, Kudrna, Dave, Paterson, Andrew H, Pires, J Chris, Chanderbali, Andre, Soltis, Douglas E, Chamala, Srikar, Barbazuk, Brad, Soltis, Pamela S, Albert, Victor A, Ma, Hong, Mandoli, Dina, Banks, Jody, Carlson, John E, Tomkins, Jeffrey, dePamphilis, Claude W, Wing, Rod A, Leebens-Mack, Jim
Argitaratua 2011

An Integrated Physical and Genetic Map of the Rice Genome

nork Chen, Mingsheng, Presting, Gernot, Barbazuk, W. Brad, Goicoechea, Jose Luis, Blackmon, Barbara, Fang, Guangchen, Kim, Hyeran, Frisch, David, Yu, Yeisoo, Sun, Shouhong, Higingbottom, Stephanie, Phimphilai, John, Phimphilai, Dao, Thurmond, Scheen, Gaudette, Brian, Li, Ping, Liu, Jingdong, Hatfield, Jamie, Main, Dorrie, Farrar, Kasey, Henderson, Caroline, Barnett, Laura, Costa, Ravi, Williams, Brian, Walser, Suzanne, Atkins, Michael, Hall, Caroline, Budiman, Muhammad A., Tomkins, Jeffery P., Luo, Meizhong, Bancroft, Ian, Salse, Jerome, Regad, Farid, Mohapatra, Trilochan, Singh, Nagendra K., Tyagi, Akhilesh K., Soderlund, Carol, Dean, Ralph A., Wing, Rod A.
Argitaratua 2002

Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63

nork Zhang, Jianwei, Chen, Ling-Ling, Xing, Feng, Kudrna, David A., Yao, Wen, Copetti, Dario, Mu, Ting, Li, Weiming, Song, Jia-Ming, Xie, Weibo, Lee, Seunghee, Talag, Jayson, Shao, Lin, An, Yue, Zhang, Chun-Liu, Ouyang, Yidan, Sun, Shuai, Jiao, Wen-Biao, Lv, Fang, Du, Bogu, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-Xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Zhou, Zhi-Wei, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A., Zhang, Qifa
Argitaratua izan da Proc Natl Acad Sci U S A (2016)