Comparative Genomic Paleontology across Plant Kingdom Reveals the Dynamics of TE-Driven Genome Evolution

by El Baidouri, Moaine, Panaud, Olivier
Published 2013

LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

by Vitte, Clémentine, Panaud, Olivier, Quesneville, Hadi
Published 2007

Horizontal transfer of transposable elements in plants

by Fortune, Philippe M, Roulin, Anne, Panaud, Olivier
Published 2008

RetrOryza: a database of the rice LTR-retrotransposons

by Chaparro, Cristian, Guyot, Romain, Zuccolo, Andrea, Piégu, Benoît, Panaud, Olivier
Published 2007

Paleogenomic Analysis of the Short Arm of Chromosome 3 Reveals the History of the African and Asian Progenitors of Cultivated Rices

by Roulin, Anne, Chaparro, Cristian, Piégu, Benoit, Jackson, Scott, Panaud, Olivier
Published 2010

Characterization of the complete plastome of Ophrys aveyronensis, a Euro-Mediterranean orchid with an intriguing disjunct geographic distribution

by Bertrand, Joris A. M., Gibert, Anaïs, Llauro, Christel, Panaud, Olivier
Published in Mitochondrial DNA B Resour (2019)

Evolution of Plant Phenotypes, from Genomes to Traits

by Casacuberta, Josep M., Jackson, Scott, Panaud, Olivier, Purugganan, Michael, Wendel, Jonathan
Published in G3 (Bethesda) (2016)

Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology

by Debladis, Emilie, Llauro, Christel, Carpentier, Marie-Christine, Mirouze, Marie, Panaud, Olivier
Published in BMC Genomics (2017)

Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae

by Roulin, Anne, Piegu, Benoit, Fortune, Philippe M, Sabot, François, D'Hont, Angélique, Manicacci, Domenica, Panaud, Olivier
Published 2009

A Genetic Model for the Female Sterility Barrier Between Asian and African Cultivated Rice Species

by Garavito, Andrea, Guyot, Romain, Lozano, Jaime, Gavory, Frédérick, Samain, Sylvie, Panaud, Olivier, Tohme, Joe, Ghesquière, Alain, Lorieux, Mathias
Published 2010

Plant root transcriptome profiling reveals a strain-dependent response during Azospirillum-rice cooperation

by Drogue, Benoît, Sanguin, Hervé, Chamam, Amel, Mozar, Michael, Llauro, Christel, Panaud, Olivier, Prigent-Combaret, Claire, Picault, Nathalie, Wisniewski-Dyé, Florence
Published in Front Plant Sci (2014)

A new approach for annotation of transposable elements using small RNA mapping

by El Baidouri, Moaine, Kim, Kyung Do, Abernathy, Brian, Arikit, Siwaret, Maumus, Florian, Panaud, Olivier, Meyers, Blake C., Jackson, Scott A.
Published in Nucleic Acids Res (2015)

Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants

by Lanciano, Sophie, Carpentier, Marie-Christine, Llauro, Christel, Jobet, Edouard, Robakowska-Hyzorek, Dagmara, Lasserre, Eric, Ghesquière, Alain, Panaud, Olivier, Mirouze, Marie
Published in PLoS Genet (2017)

QTL Mapping Combined With Comparative Analyses Identified Candidate Genes for Reduced Shattering in Setaria italica

by Odonkor, Sandra, Choi, Soyeon, Chakraborty, Debkanta, Martinez-Bello, Liliam, Wang, Xuewen, Bahri, Bochra A., Tenaillon, Maud I., Panaud, Olivier, Devos, Katrien M.
Published in Front Plant Sci (2018)

Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

by Piegu, Benoit, Guyot, Romain, Picault, Nathalie, Roulin, Anne, Saniyal, Abhijit, Kim, Hyeran, Collura, Kristi, Brar, Darshan S., Jackson, Scott, Wing, Rod A., Panaud, Olivier
Published 2006

Widespread and frequent horizontal transfers of transposable elements in plants

by El Baidouri, Moaine, Carpentier, Marie-Christine, Cooke, Richard, Gao, Dongying, Lasserre, Eric, Llauro, Christel, Mirouze, Marie, Picault, Nathalie, Jackson, Scott A., Panaud, Olivier
Published 2014

Retrotranspositional landscape of Asian rice revealed by 3000 genomes

by Carpentier, Marie-Christine, Manfroi, Ernandes, Wei, Fu-Jin, Wu, Hshin-Ping, Lasserre, Eric, Llauro, Christel, Debladis, Emilie, Akakpo, Roland, Hsing, Yue-Ie, Panaud, Olivier
Published in Nat Commun (2019)

International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories

by Ainouche, Abdelkader, Bétermier, Mireille, Chandler, Mick, Cordaux, Richard, Cristofari, Gaël, Deragon, Jean-Marc, Lesage, Pascale, Panaud, Olivier, Quesneville, Hadi, Vaury, Chantal, Vieira, Cristina, Vitte, Clémentine
Published 2012

DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses

by Wicker, Thomas, Yu, Yeisoo, Haberer, Georg, Mayer, Klaus F. X., Marri, Pradeep Reddy, Rounsley, Steve, Chen, Mingsheng, Zuccolo, Andrea, Panaud, Olivier, Wing, Rod A., Roffler, Stefan
Published in Nat Commun (2016)

Identification of high-copy number long terminal repeat retrotransposons and their expansion in Phalaenopsis orchids

by Hsu, Chia-Chi, Chen, Shu-Yun, Lai, Pei-Han, Hsiao, Yu-Yun, Tsai, Wen-Chieh, Liu, Zhong-Jian, Chung, Mei-Chu, Panaud, Olivier, Chen, Hong-Hwa
Published in BMC Genomics (2020)