Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences

od Fouts, Derrick E.
Izdano 2006

Next generation sequencing technologies and the changing landscape of phage genomics

od Klumpp, Jochen, Fouts, Derrick E., Sozhamannan, Shanmuga
Izdano 2012

Reciprocal secretion of proteins by the bacterial type III machines of plant and animal pathogens suggests universal recognition of mRNA targeting signals

od Anderson, Deborah M., Fouts, Derrick E., Collmer, Alan, Schneewind, Olaf
Izdano 1999

Genome Sequences of the Listeria ivanovii subsp. ivanovii Type Strain and Two Listeria ivanovii subsp. londoniensis Strains

od Hupfeld, Mario, Fouts, Derrick E., Loessner, Martin J., Klumpp, Jochen
Izdano u Genome Announc (2015)

A cloned Erwinia chrysanthemi Hrp (type III protein secretion) system functions in Escherichia coli to deliver Pseudomonas syringae Avr signals to plant cells and to secrete Avr pr...

od Ham, Jong Hyun, Bauer, David W., Fouts, Derrick E., Collmer, Alan
Izdano 1998

PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species

od Fouts, Derrick E., Brinkac, Lauren, Beck, Erin, Inman, Jason, Sutton, Granger
Izdano 2012

Leptospiral Pathogenomics

od Lehmann, Jason S., Matthias, Michael A., Vinetz, Joseph M., Fouts, Derrick E.
Izdano u Pathogens (2014)

GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models

od Clarke, Thomas H, Brinkac, Lauren M, Sutton, Granger, Fouts, Derrick E
Izdano u Bioinformatics (2018)

221. Newly-Named Klebsiella aerogenes Is Associated with Poor Clinical Outcomes Relative to Enterobacter cloacae Complex in Patients with Bloodstream Infection

od Wesevich, Austin, Sutton, Granger, Fouts, Derrick, Fowler, Vance G, Thaden, Joshua
Izdano u Open Forum Infect Dis (2019)

Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is...

od Sutton, Granger G., Brinkac, Lauren M., Clarke, Thomas H., Fouts, Derrick E.
Izdano u F1000Res (2018)

Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease

od Fouts, Derrick E., Torralba, Manolito, Nelson, Karen E., Brenner, David A., Schnabl, Bernd
Izdano 2012

Genome Sequences of Three Frequently Used Listeria monocytogenes and Listeria ivanovii Strains

od Klumpp, Jochen, Staubli, Titu, Schmitter, Sibylle, Hupfeld, Mario, Fouts, Derrick E., Loessner, Martin J.
Izdano 2014

LOCUST: a custom sequence locus typer for classifying microbial isolates

od Brinkac, Lauren M, Beck, Erin, Inman, Jason, Venepally, Pratap, Fouts, Derrick E, Sutton, Granger
Izdano u Bioinformatics (2017)

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes

od Clarke, Thomas H., Brinkac, Lauren M., Inman, Jason M., Sutton, Granger, Fouts, Derrick E.
Izdano u BMC Bioinformatics (2018)

The gut mycobiome: a novel player in chronic liver diseases

od Jiang, Lu, Stärkel, Peter, Fan, Jian-Gao, Fouts, Derrick Eugene, Bacher, Petra, Schnabl, Bernd
Izdano u J Gastroenterol (2020)

OMeta: an ontology-based, data-driven metadata tracking system

od Singh, Indresh, Kuscuoglu, Mehmet, Harkins, Derek M., Sutton, Granger, Fouts, Derrick E., Nelson, Karen E.
Izdano u BMC Bioinformatics (2019)

Bacteriophage φEf11 ORF28 Endolysin, a Multifunctional Lytic Enzyme with Properties Distinct from All Other Identified Enterococcus faecalis Phage Endolysins

od Zhang, Hongming, Buttaro, Bettina A., Fouts, Derrick E., Sanjari, Salar, Evans, Bradley S., Stevens, Roy H.
Izdano u Appl Environ Microbiol (2019)

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients

od Lang, Sonja, Fairfied, Bradley, Gao, Bei, Duan, Yi, Zhang, Xinlian, Fouts, Derrick E., Schnabl, Bernd
Izdano u Gut Microbes (2020)

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly

od McCorrison, Jamison M, Venepally, Pratap, Singh, Indresh, Fouts, Derrick E, Lasken, Roger S, Methé, Barbara A
Izdano u BMC Bioinformatics (2014)

Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in Klebsiella quasipneumoniae from Neonates in a Nigerian Hospital

od Brinkac, Lauren M., White, Richard, D’Souza, Roshan, Nguyen, Kevin, Obaro, Stephen K., Fouts, Derrick E.
Izdano u mSphere (2019)