Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences

Por Fouts, Derrick E.
Publicado em 2006

Next generation sequencing technologies and the changing landscape of phage genomics

Por Klumpp, Jochen, Fouts, Derrick E., Sozhamannan, Shanmuga
Publicado em 2012

Reciprocal secretion of proteins by the bacterial type III machines of plant and animal pathogens suggests universal recognition of mRNA targeting signals

Por Anderson, Deborah M., Fouts, Derrick E., Collmer, Alan, Schneewind, Olaf
Publicado em 1999

Genome Sequences of the Listeria ivanovii subsp. ivanovii Type Strain and Two Listeria ivanovii subsp. londoniensis Strains

Por Hupfeld, Mario, Fouts, Derrick E., Loessner, Martin J., Klumpp, Jochen
Publicado no Genome Announc (2015)

A cloned Erwinia chrysanthemi Hrp (type III protein secretion) system functions in Escherichia coli to deliver Pseudomonas syringae Avr signals to plant cells and to secrete Avr pr...

Por Ham, Jong Hyun, Bauer, David W., Fouts, Derrick E., Collmer, Alan
Publicado em 1998

PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species

Por Fouts, Derrick E., Brinkac, Lauren, Beck, Erin, Inman, Jason, Sutton, Granger
Publicado em 2012

Leptospiral Pathogenomics

Por Lehmann, Jason S., Matthias, Michael A., Vinetz, Joseph M., Fouts, Derrick E.
Publicado no Pathogens (2014)

GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models

Por Clarke, Thomas H, Brinkac, Lauren M, Sutton, Granger, Fouts, Derrick E
Publicado no Bioinformatics (2018)

221. Newly-Named Klebsiella aerogenes Is Associated with Poor Clinical Outcomes Relative to Enterobacter cloacae Complex in Patients with Bloodstream Infection

Por Wesevich, Austin, Sutton, Granger, Fouts, Derrick, Fowler, Vance G, Thaden, Joshua
Publicado no Open Forum Infect Dis (2019)

Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is...

Por Sutton, Granger G., Brinkac, Lauren M., Clarke, Thomas H., Fouts, Derrick E.
Publicado no F1000Res (2018)

Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease

Por Fouts, Derrick E., Torralba, Manolito, Nelson, Karen E., Brenner, David A., Schnabl, Bernd
Publicado em 2012

Genome Sequences of Three Frequently Used Listeria monocytogenes and Listeria ivanovii Strains

Por Klumpp, Jochen, Staubli, Titu, Schmitter, Sibylle, Hupfeld, Mario, Fouts, Derrick E., Loessner, Martin J.
Publicado em 2014

LOCUST: a custom sequence locus typer for classifying microbial isolates

Por Brinkac, Lauren M, Beck, Erin, Inman, Jason, Venepally, Pratap, Fouts, Derrick E, Sutton, Granger
Publicado no Bioinformatics (2017)

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes

Por Clarke, Thomas H., Brinkac, Lauren M., Inman, Jason M., Sutton, Granger, Fouts, Derrick E.
Publicado no BMC Bioinformatics (2018)

The gut mycobiome: a novel player in chronic liver diseases

Por Jiang, Lu, Stärkel, Peter, Fan, Jian-Gao, Fouts, Derrick Eugene, Bacher, Petra, Schnabl, Bernd
Publicado no J Gastroenterol (2020)

OMeta: an ontology-based, data-driven metadata tracking system

Por Singh, Indresh, Kuscuoglu, Mehmet, Harkins, Derek M., Sutton, Granger, Fouts, Derrick E., Nelson, Karen E.
Publicado no BMC Bioinformatics (2019)

Bacteriophage φEf11 ORF28 Endolysin, a Multifunctional Lytic Enzyme with Properties Distinct from All Other Identified Enterococcus faecalis Phage Endolysins

Por Zhang, Hongming, Buttaro, Bettina A., Fouts, Derrick E., Sanjari, Salar, Evans, Bradley S., Stevens, Roy H.
Publicado no Appl Environ Microbiol (2019)

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients

Por Lang, Sonja, Fairfied, Bradley, Gao, Bei, Duan, Yi, Zhang, Xinlian, Fouts, Derrick E., Schnabl, Bernd
Publicado no Gut Microbes (2020)

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly

Por McCorrison, Jamison M, Venepally, Pratap, Singh, Indresh, Fouts, Derrick E, Lasken, Roger S, Methé, Barbara A
Publicado no BMC Bioinformatics (2014)

Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in Klebsiella quasipneumoniae from Neonates in a Nigerian Hospital

Por Brinkac, Lauren M., White, Richard, D’Souza, Roshan, Nguyen, Kevin, Obaro, Stephen K., Fouts, Derrick E.
Publicado no mSphere (2019)