Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences

Tekijä Fouts, Derrick E.
Julkaistu 2006

Next generation sequencing technologies and the changing landscape of phage genomics

Tekijä Klumpp, Jochen, Fouts, Derrick E., Sozhamannan, Shanmuga
Julkaistu 2012

Reciprocal secretion of proteins by the bacterial type III machines of plant and animal pathogens suggests universal recognition of mRNA targeting signals

Tekijä Anderson, Deborah M., Fouts, Derrick E., Collmer, Alan, Schneewind, Olaf
Julkaistu 1999

Genome Sequences of the Listeria ivanovii subsp. ivanovii Type Strain and Two Listeria ivanovii subsp. londoniensis Strains

Tekijä Hupfeld, Mario, Fouts, Derrick E., Loessner, Martin J., Klumpp, Jochen
Julkaisussa Genome Announc (2015)

A cloned Erwinia chrysanthemi Hrp (type III protein secretion) system functions in Escherichia coli to deliver Pseudomonas syringae Avr signals to plant cells and to secrete Avr pr...

Tekijä Ham, Jong Hyun, Bauer, David W., Fouts, Derrick E., Collmer, Alan
Julkaistu 1998

PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species

Tekijä Fouts, Derrick E., Brinkac, Lauren, Beck, Erin, Inman, Jason, Sutton, Granger
Julkaistu 2012

Leptospiral Pathogenomics

Tekijä Lehmann, Jason S., Matthias, Michael A., Vinetz, Joseph M., Fouts, Derrick E.
Julkaisussa Pathogens (2014)

GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models

Tekijä Clarke, Thomas H, Brinkac, Lauren M, Sutton, Granger, Fouts, Derrick E
Julkaisussa Bioinformatics (2018)

221. Newly-Named Klebsiella aerogenes Is Associated with Poor Clinical Outcomes Relative to Enterobacter cloacae Complex in Patients with Bloodstream Infection

Tekijä Wesevich, Austin, Sutton, Granger, Fouts, Derrick, Fowler, Vance G, Thaden, Joshua
Julkaisussa Open Forum Infect Dis (2019)

Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is...

Tekijä Sutton, Granger G., Brinkac, Lauren M., Clarke, Thomas H., Fouts, Derrick E.
Julkaisussa F1000Res (2018)

Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease

Tekijä Fouts, Derrick E., Torralba, Manolito, Nelson, Karen E., Brenner, David A., Schnabl, Bernd
Julkaistu 2012

Genome Sequences of Three Frequently Used Listeria monocytogenes and Listeria ivanovii Strains

Tekijä Klumpp, Jochen, Staubli, Titu, Schmitter, Sibylle, Hupfeld, Mario, Fouts, Derrick E., Loessner, Martin J.
Julkaistu 2014

LOCUST: a custom sequence locus typer for classifying microbial isolates

Tekijä Brinkac, Lauren M, Beck, Erin, Inman, Jason, Venepally, Pratap, Fouts, Derrick E, Sutton, Granger
Julkaisussa Bioinformatics (2017)

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes

Tekijä Clarke, Thomas H., Brinkac, Lauren M., Inman, Jason M., Sutton, Granger, Fouts, Derrick E.
Julkaisussa BMC Bioinformatics (2018)

The gut mycobiome: a novel player in chronic liver diseases

Tekijä Jiang, Lu, Stärkel, Peter, Fan, Jian-Gao, Fouts, Derrick Eugene, Bacher, Petra, Schnabl, Bernd
Julkaisussa J Gastroenterol (2020)

OMeta: an ontology-based, data-driven metadata tracking system

Tekijä Singh, Indresh, Kuscuoglu, Mehmet, Harkins, Derek M., Sutton, Granger, Fouts, Derrick E., Nelson, Karen E.
Julkaisussa BMC Bioinformatics (2019)

Bacteriophage φEf11 ORF28 Endolysin, a Multifunctional Lytic Enzyme with Properties Distinct from All Other Identified Enterococcus faecalis Phage Endolysins

Tekijä Zhang, Hongming, Buttaro, Bettina A., Fouts, Derrick E., Sanjari, Salar, Evans, Bradley S., Stevens, Roy H.
Julkaisussa Appl Environ Microbiol (2019)

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients

Tekijä Lang, Sonja, Fairfied, Bradley, Gao, Bei, Duan, Yi, Zhang, Xinlian, Fouts, Derrick E., Schnabl, Bernd
Julkaisussa Gut Microbes (2020)

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly

Tekijä McCorrison, Jamison M, Venepally, Pratap, Singh, Indresh, Fouts, Derrick E, Lasken, Roger S, Methé, Barbara A
Julkaisussa BMC Bioinformatics (2014)

Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in Klebsiella quasipneumoniae from Neonates in a Nigerian Hospital

Tekijä Brinkac, Lauren M., White, Richard, D’Souza, Roshan, Nguyen, Kevin, Obaro, Stephen K., Fouts, Derrick E.
Julkaisussa mSphere (2019)