Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences

by Fouts, Derrick E.
Published 2006

Next generation sequencing technologies and the changing landscape of phage genomics

by Klumpp, Jochen, Fouts, Derrick E., Sozhamannan, Shanmuga
Published 2012

Reciprocal secretion of proteins by the bacterial type III machines of plant and animal pathogens suggests universal recognition of mRNA targeting signals

by Anderson, Deborah M., Fouts, Derrick E., Collmer, Alan, Schneewind, Olaf
Published 1999

Genome Sequences of the Listeria ivanovii subsp. ivanovii Type Strain and Two Listeria ivanovii subsp. londoniensis Strains

by Hupfeld, Mario, Fouts, Derrick E., Loessner, Martin J., Klumpp, Jochen
Published in Genome Announc (2015)

A cloned Erwinia chrysanthemi Hrp (type III protein secretion) system functions in Escherichia coli to deliver Pseudomonas syringae Avr signals to plant cells and to secrete Avr pr...

by Ham, Jong Hyun, Bauer, David W., Fouts, Derrick E., Collmer, Alan
Published 1998

PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species

by Fouts, Derrick E., Brinkac, Lauren, Beck, Erin, Inman, Jason, Sutton, Granger
Published 2012

Leptospiral Pathogenomics

by Lehmann, Jason S., Matthias, Michael A., Vinetz, Joseph M., Fouts, Derrick E.
Published in Pathogens (2014)

GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models

by Clarke, Thomas H, Brinkac, Lauren M, Sutton, Granger, Fouts, Derrick E
Published in Bioinformatics (2018)

221. Newly-Named Klebsiella aerogenes Is Associated with Poor Clinical Outcomes Relative to Enterobacter cloacae Complex in Patients with Bloodstream Infection

by Wesevich, Austin, Sutton, Granger, Fouts, Derrick, Fowler, Vance G, Thaden, Joshua
Published in Open Forum Infect Dis (2019)

Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is...

by Sutton, Granger G., Brinkac, Lauren M., Clarke, Thomas H., Fouts, Derrick E.
Published in F1000Res (2018)

Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease

by Fouts, Derrick E., Torralba, Manolito, Nelson, Karen E., Brenner, David A., Schnabl, Bernd
Published 2012

Genome Sequences of Three Frequently Used Listeria monocytogenes and Listeria ivanovii Strains

by Klumpp, Jochen, Staubli, Titu, Schmitter, Sibylle, Hupfeld, Mario, Fouts, Derrick E., Loessner, Martin J.
Published 2014

LOCUST: a custom sequence locus typer for classifying microbial isolates

by Brinkac, Lauren M, Beck, Erin, Inman, Jason, Venepally, Pratap, Fouts, Derrick E, Sutton, Granger
Published in Bioinformatics (2017)

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes

by Clarke, Thomas H., Brinkac, Lauren M., Inman, Jason M., Sutton, Granger, Fouts, Derrick E.
Published in BMC Bioinformatics (2018)

The gut mycobiome: a novel player in chronic liver diseases

by Jiang, Lu, Stärkel, Peter, Fan, Jian-Gao, Fouts, Derrick Eugene, Bacher, Petra, Schnabl, Bernd
Published in J Gastroenterol (2020)

OMeta: an ontology-based, data-driven metadata tracking system

by Singh, Indresh, Kuscuoglu, Mehmet, Harkins, Derek M., Sutton, Granger, Fouts, Derrick E., Nelson, Karen E.
Published in BMC Bioinformatics (2019)

Bacteriophage φEf11 ORF28 Endolysin, a Multifunctional Lytic Enzyme with Properties Distinct from All Other Identified Enterococcus faecalis Phage Endolysins

by Zhang, Hongming, Buttaro, Bettina A., Fouts, Derrick E., Sanjari, Salar, Evans, Bradley S., Stevens, Roy H.
Published in Appl Environ Microbiol (2019)

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients

by Lang, Sonja, Fairfied, Bradley, Gao, Bei, Duan, Yi, Zhang, Xinlian, Fouts, Derrick E., Schnabl, Bernd
Published in Gut Microbes (2020)

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly

by McCorrison, Jamison M, Venepally, Pratap, Singh, Indresh, Fouts, Derrick E, Lasken, Roger S, Methé, Barbara A
Published in BMC Bioinformatics (2014)

Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in Klebsiella quasipneumoniae from Neonates in a Nigerian Hospital

by Brinkac, Lauren M., White, Richard, D’Souza, Roshan, Nguyen, Kevin, Obaro, Stephen K., Fouts, Derrick E.
Published in mSphere (2019)