Computing expectation values for RNA motifs using discrete convolutions

od Lambert, André, Legendre, Matthieu, Fontaine, Jean-Fred, Gautheret, Daniel
Izdano 2005

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets

od Taškova, Katerina, Fontaine, Jean-Fred, Mrowka, Ralf, Andrade-Navarro, Miguel A.
izdano v PLoS One (2019)

Computational identification of cell-specific variable regions in ChIP-seq data

od Andreani, Tommaso, Albrecht, Steffen, Fontaine, Jean-Fred, Andrade-Navarro, Miguel A
izdano v Nucleic Acids Res (2020)

seqQscorer: automated quality control of next-generation sequencing data using machine learning

od Albrecht, Steffen, Sprang, Maximilian, Andrade-Navarro, Miguel A., Fontaine, Jean-Fred
izdano v Genome Biol (2021)

Génie: literature-based gene prioritization at multi genomic scale

od Fontaine, Jean-Fred, Priller, Florian, Barbosa-Silva, Adriano, Andrade-Navarro, Miguel A.
Izdano 2011

Using cited references to improve the retrieval of related biomedical documents

od Ortuño, Francisco M, Rojas, Ignacio, Andrade-Navarro, Miguel A, Fontaine, Jean-Fred
Izdano 2013

DiseaseLinc: Disease Enrichment Analysis of Sets of Differentially Expressed LincRNAs

od More, Piyush, Talyan, Sweta, Fontaine, Jean-Fred, Muro, Enrique M., Andrade-Navarro, Miguel A.
izdano v Cells (2021)

HIPPIE: Integrating Protein Interaction Networks with Experiment Based Quality Scores

od Schaefer, Martin H., Fontaine, Jean-Fred, Vinayagam, Arunachalam, Porras, Pablo, Wanker, Erich E., Andrade-Navarro, Miguel A.
Izdano 2012

MedlineRanker: flexible ranking of biomedical literature

od Fontaine, Jean-Fred, Barbosa-Silva, Adriano, Schaefer, Martin, Huska, Matthew R., Muro, Enrique M., Andrade-Navarro, Miguel A.
Izdano 2009

PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries

od Barbosa-Silva, Adriano, Fontaine, Jean-Fred, Donnard, Elisa R, Stussi, Fernanda, Ortega, J Miguel, Andrade-Navarro, Miguel A
Izdano 2011

CXCL5 limits macrophage foam cell formation in atherosclerosis

od Rousselle, Anthony, Qadri, Fatimunnisa, Leukel, Lisa, Yilmaz, Rüstem, Fontaine, Jean-Fred, Sihn, Gabin, Bader, Michael, Ahluwalia, Amrita, Duchene, Johan
Izdano 2013

Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts

od Neves, Mariana, Damaschun, Alexander, Mah, Nancy, Lekschas, Fritz, Seltmann, Stefanie, Stachelscheid, Harald, Fontaine, Jean-Fred, Kurtz, Andreas, Leser, Ulf
Izdano 2013

The ERPIN server: an interface to profile-based RNA motif identification

od Lambert, André, Fontaine, Jean-Fred, Legendre, Matthieu, Leclerc, Fabrice, Permal, Emmanuelle, Major, François, Putzer, Harald, Delfour, Olivier, Michot, Bernard, Gautheret, Daniel
Izdano 2004

CELDA – an ontology for the comprehensive representation of cells in complex systems

od Seltmann, Stefanie, Stachelscheid, Harald, Damaschun, Alexander, Jansen, Ludger, Lekschas, Fritz, Fontaine, Jean-Fred, Nguyen-Dobinsky, Throng Nghia, Leser, Ulf, Kurtz, Andreas
Izdano 2013

CellFinder: a cell data repository

od Stachelscheid, Harald, Seltmann, Stefanie, Lekschas, Fritz, Fontaine, Jean-Fred, Mah, Nancy, Neves, Mariana, Andrade-Navarro, Miguel A., Leser, Ulf, Kurtz, Andreas
Izdano 2014

Estrogen-Related Receptor Alpha Modulates Lactate Dehydrogenase Activity in Thyroid Tumors

od Mirebeau-Prunier, Delphine, Le Pennec, Soazig, Jacques, Caroline, Fontaine, Jean-Fred, Gueguen, Naig, Boutet-Bouzamondo, Nathalie, Donnart, Audrey, Malthièry, Yves, Savagner, Frédérique
Izdano 2013

PGC-1-Related Coactivator Modulates Mitochondrial-Nuclear Crosstalk through Endogenous Nitric Oxide in a Cellular Model of Oncocytic Thyroid Tumours

od Raharijaona, Mahatsangy, Le Pennec, Soazig, Poirier, Julie, Mirebeau-Prunier, Delphine, Rouxel, Clothilde, Jacques, Caroline, Fontaine, Jean-Fred, Malthiery, Yves, Houlgatte, Rémi, Savagner, Frédérique
Izdano 2009

LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships

od Fontaine Jean-Fred, Pavlopoulos Georgios A, Magalhães Ivan LF, Soldatos Theodoros G, Barbosa-Silva Adriano, Andrade-Navarro Miguel A, Schneider Reinhard, Ortega J Miguel
Izdano 2010-02-01

LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships

od Barbosa-Silva, Adriano, Soldatos, Theodoros G, Magalhães, Ivan LF, Pavlopoulos, Georgios A, Fontaine, Jean-Fred, Andrade-Navarro, Miguel A, Schneider, Reinhard, Ortega, J Miguel
Izdano 2010

Defining human tyrosine kinase phosphorylation networks using yeast as an in vivo model substrate

od Corwin, Thomas, Woodsmith, Jonathan, Apelt, Federico, Fontaine, Jean-Fred, Meierhofer, David, Helmuth, Johannes, Grossmann, Arndt, Andrade-Navarro, Miguel A., Ballif, Bryan A., Stelzl, Ulrich
izdano v Cell Syst (2017)