A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins

Por Martelli Pier, Fariselli Piero, Casadio Rita
Publicado em 2005-12-01

I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure

Por Capriotti, Emidio, Fariselli, Piero, Casadio, Rita
Publicado em 2005

Network measures for protein folding state discrimination

Por Menichetti, Giulia, Fariselli, Piero, Remondini, Daniel
Publicado no Sci Rep (2016)

A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins

Por Fariselli, Piero, Martelli, Pier Luigi, Casadio, Rita
Publicado em 2005

A three-state prediction of single point mutations on protein stability changes

Por Capriotti, Emidio, Fariselli, Piero, Rossi, Ivan, Casadio, Rita
Publicado em 2008

An entropy criterion to detect minimally frustrated intermediates in native proteins

Por Compiani, Mario, Fariselli, Piero, Martelli, Pier Luigi, Casadio, Rita
Publicado em 1998

eSLDB: eukaryotic subcellular localization database

Por Pierleoni, Andea, Martelli, Pier Luigi, Fariselli, Piero, Casadio, Rita
Publicado em 2007

Fishing new proteins in the twilight zone of genomes: The test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria

Por Casadio, Rita, Fariselli, Piero, Finocchiaro, Giacomo, Martelli, Pier Luigi
Publicado em 2003

Prediction of the disulfide-bonding state of cysteines in proteins at 88% accuracy

Por Martelli, Pier Luigi, Fariselli, Piero, Malaguti, Luca, Casadio, Rita
Publicado em 2002

The Prediction of Membrane Protein Structure and Genome Structural Annotation

Por Martelli, Pier Luigi, Fariselli, Piero, Tasco, Gianluca, Casadio, Rita
Publicado em 2003

Predicting protein thermostability changes from sequence upon multiple mutations

Por Montanucci, Ludovica, Fariselli, Piero, Martelli, Pier Luigi, Casadio, Rita
Publicado em 2008

Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications

Por Fariselli, Piero, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita
Publicado em 2009

Predicting cancer-associated germline variations in proteins

Por Martelli, Pier Luigi, Fariselli, Piero, Balzani, Eva, Casadio, Rita
Publicado em 2012

Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations

Por Savojardo, Castrense, Fariselli, Piero, Martelli, Pier Luigi, Casadio, Rita
Publicado em 2013

SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments

Por Savojardo, Castrense, Martelli, Pier Luigi, Fariselli, Piero, Casadio, Rita
Publicado no Bioinformatics (2017)

NET-GE: a novel NETwork-based Gene Enrichment for detecting biological processes associated to Mendelian diseases

Por Di Lena, Pietro, Martelli, Pier Luigi, Fariselli, Piero, Casadio, Rita
Publicado no BMC Genomics (2015)

A computational approach for detecting peptidases and their specific inhibitors at the genome level

Por Bartoli, Lisa, Calabrese, Remo, Fariselli, Piero, Mita, Damiano G, Casadio, Rita
Publicado em 2007

Prediction of the transmembrane regions of β-barrel membrane proteins with a neural network-based predictor

Por Jacoboni, Irene, Martelli, Pier Luigi, Fariselli, Piero, De Pinto, Vito, Casadio, Rita
Publicado em 2001

MemPype: a pipeline for the annotation of eukaryotic membrane proteins

Por Pierleoni, Andrea, Indio, Valentina, Savojardo, Castrense, Fariselli, Piero, Martelli, Pier Luigi, Casadio, Rita
Publicado em 2011

BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences

Por Piovesan, Damiano, Luigi Martelli, Pier, Fariselli, Piero, Zauli, Andrea, Rossi, Ivan, Casadio, Rita
Publicado em 2011