Computational methods and opportunities for phosphorylation network medicine

по Chen, Yian Ann, Eschrich, Steven A.
Опубликовано в: Transl Cancer Res (2014)

Characteristics and Validation Techniques for PCA-Based Gene-Expression Signatures

по Berglund, Anders E., Welsh, Eric A., Eschrich, Steven A.
Опубликовано в: Int J Genomics (2017)

Integrating Biological Covariates into Gene Expression-Based Predictors of Radiation Sensitivity

по Kamath, Vidya P., Torres-Roca, Javier F., Eschrich, Steven A.
Опубликовано в: Int J Genomics (2017)

Iterative rank-order normalization of gene expression microarray data

по Welsh, Eric A, Eschrich, Steven A, Berglund, Anders E, Fenstermacher, David A
Опубликовано 2013

Methods for Investigation of Targeted Kinase Inhibitor Therapy using Chemical Proteomics and Phosphorylation Profiling

по Fang, Bin, Haura, Eric B., Smalley, Keiran S., Eschrich, Steven A., Koomen, John M.
Опубликовано 2010

An Interactive Resource to Probe Genetic Diversity and Estimated Ancestry in Cancer Cell Lines

по Dutil, Julie, Chen, Zhihua, Monteiro, Alvaro N., Teer, Jamie K., Eschrich, Steven A.
Опубликовано в: Cancer Res (2019)

Peritumoral and intratumoral radiomic features predict survival outcomes among patients diagnosed in lung cancer screening

по Pérez-Morales, Jaileene, Tunali, Ilke, Stringfield, Olya, Eschrich, Steven A., Balagurunathan, Yoganand, Gillies, Robert J., Schabath, Matthew B.
Опубликовано в: Sci Rep (2020)

Evaluating somatic tumor mutation detection without matched normal samples

по Teer, Jamie K., Zhang, Yonghong, Chen, Lu, Welsh, Eric A., Cress, W. Douglas, Eschrich, Steven A., Berglund, Anders E.
Опубликовано в: Hum Genomics (2017)

Phosphoproteomics reveals MAPK inhibitors enhance MET- and EGFR-driven AKT signaling in KRAS-mutant lung cancer

по Kim, Jae-Young, Welsh, Eric A., Fang, Bin, Bai, Yun, Kinose, Fumi, Eschrich, Steven A., Koomen, John M., Haura, Eric B.
Опубликовано в: Mol Cancer Res (2016)

Expanding epigenomics to archived FFPE tissues: An evaluation of DNA repair methodologies

по Siegel, Erin M, Berglund, Anders E., Riggs, Bridget M, Eschrich, Steven A., Putney, Ryan M., Ajidahun, Abidemi O., Coppola, Domenico, Shibata, David
Опубликовано в: Cancer Epidemiol Biomarkers Prev (2014)

Association between computed tomographic features and KRAS mutations in patients with stage I lung adenocarcinoma and their prognostic value

по Wang, Hua, Schabath, Matthew B., Liu, Ying, Stringfield, Olya, Balagurunathan, Yoganand, Heine, John J., Eschrich, Steven A., Ye, Zhaoxiang, Gillies, Robert J.
Опубликовано в: Clin Lung Cancer (2015)

Differences in Patient Outcomes of Prevalence, Interval, and Screen-Detected Lung Cancers in the CT Arm of the National Lung Screening Trial

по Schabath, Matthew B., Massion, Pierre P., Thompson, Zachary J., Eschrich, Steven A., Balagurunathan, Yoganand, Goldof, Dmitry, Aberle, Denise R., Gillies, Robert J.
Опубликовано в: PLoS One (2016)

APOSTL: An Interactive Galaxy Pipeline for Reproducible Analysis of Affinity Proteomics Data

по Kuenzi, Brent M., Borne, Adam L., Li, Jiannong, Haura, Eric B., Eschrich, Steven A., Koomen, John M., Rix, Uwe, Stewart, Paul A.
Опубликовано в: J Proteome Res (2016)

Use of the Total Cancer Care System to Enrich Screening for CD30-Positive Solid Tumors for Patient Enrollment Into a Brentuximab Vedotin Clinical Trial: A Pilot Study to Evaluate F...

по Li, Bin, Eschrich, Steven A, Berglund, Anders, Mitchell, Melissa, Fenstermacher, David, Danaee, Hadi, Dai, Hongyue, Sullivan, Daniel, Trepicchio, William L, Dalton, William S
Опубликовано в: JMIR Res Protoc (2017)

EPB41L5 is Associated With the Metastatic Potential of Low-grade Pancreatic Neuroendocrine Tumors

по SALLER, JAMES, SEYDAFKAN, SHABNAM, SHAHID, MOHAMMAD, GADARA, MANOJ, CIVES, MAURO, ESCHRICH, STEVEN A., BOULWARE, DAVID, STROSBERG, JONATHAN R., AEJAZ, NASIR, COPPOLA, DOMENICO
Опубликовано в: Cancer Genomics Proteomics (2019)

Differences between colon cancer primaries and metastases utilizing a molecular assay for tumor radiosensitivity suggest implications for potential oligometastatic SBRT patient sel...

по Ahmed, Kamran A., Fulp, William J., Berglund, Anders E., Hoffe, Sarah E., Dilling, Thomas J., Eschrich, Steven A., Shridhar, Ravi, Torres-Roca, Javier F.
Опубликовано в: Int J Radiat Oncol Biol Phys (2015)

Knockdown of CSE1L Gene in Colorectal Cancer Reduces Tumorigenesis in Vitro

по Pimiento, Jose M., Neill, Kevin G., Henderson-Jackson, Evita, Eschrich, Steven A., Chen, Dung-Tsa, Husain, Kazim, Shibata, David, Coppola, Domenico, Malafa, Mokenge P.
Опубликовано в: Am J Pathol (2016)

GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis

по Li, Qian, Fisher, Kate, Meng, Wenjun, Fang, Bin, Welsh, Eric, Haura, Eric B, Koomen, John M, Eschrich, Steven A, Fridley, Brooke L, Chen, Y Ann
Опубликовано в: Bioinformatics (2020)

LC-HRMS of derivatized urinary estrogens and estrogen metabolites in postmenopausal women

по Darville, Lancia N.F., Cline, Jayden K., Rozmeski, Carrie, Martinez, Yessica C., Rich, Shannan, Eschrich, Steven A., Egan, Kathleen M., Yaghjyan, Lusine, Koomen, John M.
Опубликовано в: J Chromatogr B Analyt Technol Biomed Life Sci (2020)

Activity-Based Proteomics Reveals Heterogeneous Kinome and ATP-Binding Proteome Responses to MEK Inhibition in KRAS Mutant Lung Cancer

по Kim, Jae-Young, Stewart, Paul A., Borne, Adam L., Fang, Bin, Welsh, Eric A., Chen, Yian Ann, Eschrich, Steven A., Koomen, John M., Haura, Eric B.
Опубликовано в: Proteomes (2016)