Real time structural search of the Protein Data Bank

af Guzenko, Dmytro, Burley, Stephen K., Duarte, Jose M.
Udgivet i PLoS Comput Biol (2020)

An analysis of oligomerization interfaces in transmembrane proteins

af Duarte, Jose M, Biyani, Nikhil, Baskaran, Kumaran, Capitani, Guido
Udgivet 2013

Protein interface classification by evolutionary analysis

af Duarte, Jose M, Srebniak, Adam, Schärer, Martin A, Capitani, Guido
Udgivet 2012

Defining an Essence of Structure Determining Residue Contacts in Proteins

af Sathyapriya, R., Duarte, Jose M., Stehr, Henning, Filippis, Ioannis, Lappe, Michael
Udgivet 2009

Optimal contact definition for reconstruction of Contact Maps

af Duarte, Jose M, Sathyapriya, Rajagopal, Stehr, Henning, Filippis, Ioannis, Lappe, Michael
Udgivet 2010

A PDB-wide, evolution-based assessment of protein–protein interfaces

af Baskaran, Kumaran, Duarte, Jose M, Biyani, Nikhil, Bliven, Spencer, Capitani, Guido
Udgivet i BMC Struct Biol (2014)

Automated evaluation of quaternary structures from protein crystals

af Bliven, Spencer, Lafita, Aleix, Parker, Althea, Capitani, Guido, Duarte, Jose M.
Udgivet i PLoS Comput Biol (2018)

Assessment of protein assembly prediction in CASP13

af Guzenko, Dmytro, Lafita, Aleix, Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Duarte, Jose M.
Udgivet i Proteins (2019)

PDBWiki: added value through community annotation of the Protein Data Bank

af Stehr, Henning, Duarte, Jose M., Lappe, Michael, Bhak, Jong, Bolser, Dan M.
Udgivet 2010

Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts

af Capitani, Guido, Duarte, Jose M., Baskaran, Kumaran, Bliven, Spencer, Somody, Joseph C.
Udgivet i Bioinformatics (2016)

RCSB Protein Data Bank 1D tools and services

af Segura, Joan, Rose, Yana, Westbrook, John, Burley, Stephen K, Duarte, Jose M
Udgivet i Bioinformatics (2020)

Temperament, Plasticity, and Emotions in Defensive Behaviour of Paca (Mammalia, Hystricognatha)

af Nogueira, Selene S. C., Nogueira-Filho, Sérgio L. G., Duarte, José M. B., Mendl, Michael
Udgivet i Animals (Basel) (2021)

Towards an efficient compression of 3D coordinates of macromolecular structures

af Valasatava, Yana, Bradley, Anthony R., Rose, Alexander S., Duarte, Jose M., Prlić, Andreas, Rose, Peter W.
Udgivet i PLoS One (2017)

NGL viewer: web-based molecular graphics for large complexes

af Rose, Alexander S, Bradley, Anthony R, Valasatava, Yana, Duarte, Jose M, Prlić, Andreas, Rose, Peter W
Udgivet i Bioinformatics (2018)

MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures

af Bradley, Anthony R., Rose, Alexander S., Pavelka, Antonín, Valasatava, Yana, Duarte, Jose M., Prlić, Andreas, Rose, Peter W.
Udgivet i PLoS Comput Biol (2017)

Assessment of protein assembly prediction in CASP12

af Lafita, Aleix, Bliven, Spencer, Kryshtafovych, Andriy, Bertoni, Martino, Monastyrskyy, Bohdan, Duarte, Jose M., Schwede, Torsten, Capitani, Guido
Udgivet i Proteins (2017)

Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution

af Schaerli, Yolanda, Jiménez, Alba, Duarte, José M, Mihajlovic, Ljiljana, Renggli, Julien, Isalan, Mark, Sharpe, James, Wagner, Andreas
Udgivet i Mol Syst Biol (2018)

The structural impact of cancer-associated missense mutations in oncogenes and tumor suppressors

af Stehr, Henning, Jang, Seon-Hi J, Duarte, José M, Wierling, Christoph, Lehrach, Hans, Lappe, Michael, Lange, Bodo MH
Udgivet 2011

Azaperone and xylazine: A pharmacological combination to facilitate captive deer management for red brocket deer (Mazama americana)

af Carregaro, Adriano B., Ferrari, Bárbara G., da Silva, André N. E., Xavier, Nathalia V., Duarte, José M. B.
Udgivet i PLoS One (2019)

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education

af Burley, Stephen K., Berman, Helen M., Christie, Cole, Duarte, Jose M., Feng, Zukang, Westbrook, John, Young, Jasmine, Zardecki, Christine
Udgivet i Protein Sci (2017)