Real time structural search of the Protein Data Bank

per Guzenko, Dmytro, Burley, Stephen K., Duarte, Jose M.
Publicat a PLoS Comput Biol (2020)

An analysis of oligomerization interfaces in transmembrane proteins

per Duarte, Jose M, Biyani, Nikhil, Baskaran, Kumaran, Capitani, Guido
Publicat 2013

Protein interface classification by evolutionary analysis

per Duarte, Jose M, Srebniak, Adam, Schärer, Martin A, Capitani, Guido
Publicat 2012

Defining an Essence of Structure Determining Residue Contacts in Proteins

per Sathyapriya, R., Duarte, Jose M., Stehr, Henning, Filippis, Ioannis, Lappe, Michael
Publicat 2009

Optimal contact definition for reconstruction of Contact Maps

per Duarte, Jose M, Sathyapriya, Rajagopal, Stehr, Henning, Filippis, Ioannis, Lappe, Michael
Publicat 2010

A PDB-wide, evolution-based assessment of protein–protein interfaces

per Baskaran, Kumaran, Duarte, Jose M, Biyani, Nikhil, Bliven, Spencer, Capitani, Guido
Publicat a BMC Struct Biol (2014)

Automated evaluation of quaternary structures from protein crystals

per Bliven, Spencer, Lafita, Aleix, Parker, Althea, Capitani, Guido, Duarte, Jose M.
Publicat a PLoS Comput Biol (2018)

Assessment of protein assembly prediction in CASP13

per Guzenko, Dmytro, Lafita, Aleix, Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Duarte, Jose M.
Publicat a Proteins (2019)

PDBWiki: added value through community annotation of the Protein Data Bank

per Stehr, Henning, Duarte, Jose M., Lappe, Michael, Bhak, Jong, Bolser, Dan M.
Publicat 2010

Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts

per Capitani, Guido, Duarte, Jose M., Baskaran, Kumaran, Bliven, Spencer, Somody, Joseph C.
Publicat a Bioinformatics (2016)

RCSB Protein Data Bank 1D tools and services

per Segura, Joan, Rose, Yana, Westbrook, John, Burley, Stephen K, Duarte, Jose M
Publicat a Bioinformatics (2020)

Temperament, Plasticity, and Emotions in Defensive Behaviour of Paca (Mammalia, Hystricognatha)

per Nogueira, Selene S. C., Nogueira-Filho, Sérgio L. G., Duarte, José M. B., Mendl, Michael
Publicat a Animals (Basel) (2021)

Towards an efficient compression of 3D coordinates of macromolecular structures

per Valasatava, Yana, Bradley, Anthony R., Rose, Alexander S., Duarte, Jose M., Prlić, Andreas, Rose, Peter W.
Publicat a PLoS One (2017)

NGL viewer: web-based molecular graphics for large complexes

per Rose, Alexander S, Bradley, Anthony R, Valasatava, Yana, Duarte, Jose M, Prlić, Andreas, Rose, Peter W
Publicat a Bioinformatics (2018)

MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures

per Bradley, Anthony R., Rose, Alexander S., Pavelka, Antonín, Valasatava, Yana, Duarte, Jose M., Prlić, Andreas, Rose, Peter W.
Publicat a PLoS Comput Biol (2017)

Assessment of protein assembly prediction in CASP12

per Lafita, Aleix, Bliven, Spencer, Kryshtafovych, Andriy, Bertoni, Martino, Monastyrskyy, Bohdan, Duarte, Jose M., Schwede, Torsten, Capitani, Guido
Publicat a Proteins (2017)

Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution

per Schaerli, Yolanda, Jiménez, Alba, Duarte, José M, Mihajlovic, Ljiljana, Renggli, Julien, Isalan, Mark, Sharpe, James, Wagner, Andreas
Publicat a Mol Syst Biol (2018)

The structural impact of cancer-associated missense mutations in oncogenes and tumor suppressors

per Stehr, Henning, Jang, Seon-Hi J, Duarte, José M, Wierling, Christoph, Lehrach, Hans, Lappe, Michael, Lange, Bodo MH
Publicat 2011

Azaperone and xylazine: A pharmacological combination to facilitate captive deer management for red brocket deer (Mazama americana)

per Carregaro, Adriano B., Ferrari, Bárbara G., da Silva, André N. E., Xavier, Nathalia V., Duarte, José M. B.
Publicat a PLoS One (2019)

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education

per Burley, Stephen K., Berman, Helen M., Christie, Cole, Duarte, Jose M., Feng, Zukang, Westbrook, John, Young, Jasmine, Zardecki, Christine
Publicat a Protein Sci (2017)