Real time structural search of the Protein Data Bank

Autor Guzenko, Dmytro, Burley, Stephen K., Duarte, Jose M.
Vydáno v PLoS Comput Biol (2020)

An analysis of oligomerization interfaces in transmembrane proteins

Autor Duarte, Jose M, Biyani, Nikhil, Baskaran, Kumaran, Capitani, Guido
Vydáno 2013

Protein interface classification by evolutionary analysis

Autor Duarte, Jose M, Srebniak, Adam, Schärer, Martin A, Capitani, Guido
Vydáno 2012

Defining an Essence of Structure Determining Residue Contacts in Proteins

Autor Sathyapriya, R., Duarte, Jose M., Stehr, Henning, Filippis, Ioannis, Lappe, Michael
Vydáno 2009

Optimal contact definition for reconstruction of Contact Maps

Autor Duarte, Jose M, Sathyapriya, Rajagopal, Stehr, Henning, Filippis, Ioannis, Lappe, Michael
Vydáno 2010

A PDB-wide, evolution-based assessment of protein–protein interfaces

Autor Baskaran, Kumaran, Duarte, Jose M, Biyani, Nikhil, Bliven, Spencer, Capitani, Guido
Vydáno v BMC Struct Biol (2014)

Automated evaluation of quaternary structures from protein crystals

Autor Bliven, Spencer, Lafita, Aleix, Parker, Althea, Capitani, Guido, Duarte, Jose M.
Vydáno v PLoS Comput Biol (2018)

Assessment of protein assembly prediction in CASP13

Autor Guzenko, Dmytro, Lafita, Aleix, Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Duarte, Jose M.
Vydáno v Proteins (2019)

PDBWiki: added value through community annotation of the Protein Data Bank

Autor Stehr, Henning, Duarte, Jose M., Lappe, Michael, Bhak, Jong, Bolser, Dan M.
Vydáno 2010

Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts

Autor Capitani, Guido, Duarte, Jose M., Baskaran, Kumaran, Bliven, Spencer, Somody, Joseph C.
Vydáno v Bioinformatics (2016)

RCSB Protein Data Bank 1D tools and services

Autor Segura, Joan, Rose, Yana, Westbrook, John, Burley, Stephen K, Duarte, Jose M
Vydáno v Bioinformatics (2020)

Temperament, Plasticity, and Emotions in Defensive Behaviour of Paca (Mammalia, Hystricognatha)

Autor Nogueira, Selene S. C., Nogueira-Filho, Sérgio L. G., Duarte, José M. B., Mendl, Michael
Vydáno v Animals (Basel) (2021)

Towards an efficient compression of 3D coordinates of macromolecular structures

Autor Valasatava, Yana, Bradley, Anthony R., Rose, Alexander S., Duarte, Jose M., Prlić, Andreas, Rose, Peter W.
Vydáno v PLoS One (2017)

NGL viewer: web-based molecular graphics for large complexes

Autor Rose, Alexander S, Bradley, Anthony R, Valasatava, Yana, Duarte, Jose M, Prlić, Andreas, Rose, Peter W
Vydáno v Bioinformatics (2018)

MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures

Autor Bradley, Anthony R., Rose, Alexander S., Pavelka, Antonín, Valasatava, Yana, Duarte, Jose M., Prlić, Andreas, Rose, Peter W.
Vydáno v PLoS Comput Biol (2017)

Assessment of protein assembly prediction in CASP12

Autor Lafita, Aleix, Bliven, Spencer, Kryshtafovych, Andriy, Bertoni, Martino, Monastyrskyy, Bohdan, Duarte, Jose M., Schwede, Torsten, Capitani, Guido
Vydáno v Proteins (2017)

Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution

Autor Schaerli, Yolanda, Jiménez, Alba, Duarte, José M, Mihajlovic, Ljiljana, Renggli, Julien, Isalan, Mark, Sharpe, James, Wagner, Andreas
Vydáno v Mol Syst Biol (2018)

The structural impact of cancer-associated missense mutations in oncogenes and tumor suppressors

Autor Stehr, Henning, Jang, Seon-Hi J, Duarte, José M, Wierling, Christoph, Lehrach, Hans, Lappe, Michael, Lange, Bodo MH
Vydáno 2011

Azaperone and xylazine: A pharmacological combination to facilitate captive deer management for red brocket deer (Mazama americana)

Autor Carregaro, Adriano B., Ferrari, Bárbara G., da Silva, André N. E., Xavier, Nathalia V., Duarte, José M. B.
Vydáno v PLoS One (2019)

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education

Autor Burley, Stephen K., Berman, Helen M., Christie, Cole, Duarte, Jose M., Feng, Zukang, Westbrook, John, Young, Jasmine, Zardecki, Christine
Vydáno v Protein Sci (2017)