SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

由 Varet, Hugo, Brillet-Guéguen, Loraine, Coppée, Jean-Yves, Dillies, Marie-Agnès
發表在 PLoS One (2016)

Non-Pathogenic Mopeia Virus Induces More Robust Activation of Plasmacytoid Dendritic Cells than Lassa Virus

由 Schaeffer, Justine, Reynard, Stéphanie, Carnec, Xavier, Pietrosemoli, Natalia, Dillies, Marie-Agnès, Baize, Sylvain
發表在 Viruses (2019)

The Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence

由 van Schaik, Willem, Château, Alice, Dillies, Marie-Agnès, Coppée, Jean-Yves, Sonenshein, Abraham L., Fouet, Agnès
出版 2009

Gene expression analysis in EBV-infected ataxia-telangiectasia cell lines by RNA-sequencing reveals protein synthesis defect and immune abnormalities

由 Tatfi, Moussab, Perthame, Emeline, Hillion, Kenzo-Hugo, Dillies, Marie-Agnès, Menager, Hervé, Hermine, Olivier, Suarez, Felipe
發表在 Orphanet J Rare Dis (2021)

Lassa virus activates myeloid dendritic cells but suppresses their ability to stimulate T cells

由 Schaeffer, Justine, Carnec, Xavier, Reynard, Stéphanie, Mateo, Mathieu, Picard, Caroline, Pietrosemoli, Natalia, Dillies, Marie-Agnès, Baize, Sylvain
發表在 PLoS Pathog (2018)

Genomic determinants for initiation and length of natural antisense transcripts in Entamoeba histolytica

由 Mornico, Damien, Hon, Chung-Chau, Koutero, Mikael, Weber, Christian, Coppee, Jean-Yves, Dillies, Marie-Agnes, Guillen, Nancy
發表在 Sci Rep (2020)

Overexpression of the Heterochromatinization Factor BAHD1 in HEK293 Cells Differentially Reshapes the DNA Methylome on Autosomes and X Chromosome

由 Libertini, Emanuele, Lebreton, Alice, Lakisic, Goran, Dillies, Marie-Agnès, Beck, Stephan, Coppée, Jean-Yves, Cossart, Pascale, Bierne, Hélène
發表在 Front Genet (2015)

MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets

由 Hourdel, Véronique, Volant, Stevenn, O’Brien, Darragh P., Chenal, Alexandre, Chamot-Rooke, Julia, Dillies, Marie-Agnès, Brier, Sébastien
發表在 Bioinformatics (2016)

Identification of the Virulence Landscape Essential for Entamoeba histolytica Invasion of the Human Colon

由 Thibeaux, Roman, Weber, Christian, Hon, Chung-Chau, Dillies, Marie-Agnès, Avé, Patrick, Coppée, Jean-Yves, Labruyère, Elisabeth, Guillén, Nancy
出版 2013

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment

由 Weber, Christian, Koutero, Mikael, Dillies, Marie-Agnes, Varet, Hugo, Lopez-Camarillo, Cesar, Coppée, Jean Yves, Hon, Chung-Chau, Guillén, Nancy
發表在 Sci Rep (2016)

Expanding the RpoS/σ(S)-Network by RNA Sequencing and Identification of σ(S)-Controlled Small RNAs in Salmonella

由 Lévi-Meyrueis, Corinne, Monteil, Véronique, Sismeiro, Odile, Dillies, Marie-Agnès, Monot, Marc, Jagla, Bernd, Coppée, Jean-Yves, Dupuy, Bruno, Norel, Françoise
出版 2014

Temporal transcriptomic response during arsenic stress in <it>Herminiimonas arsenicoxydans</it>

由 Arsène-Ploetze Florence, Coppee Jean-Yves, Dillies Marie-Agnès, Proux Caroline, Fardeau Marie-Laure, Koechler Sandrine, Cleiss-Arnold Jessica, Bertin Philippe N
出版 2010-12-01

Transcriptome analysis of antigenic variation in Plasmodium falciparum - var silencing is not dependent on antisense RNA

由 Ralph, Stuart A, Bischoff, Emmanuel, Mattei, Denise, Sismeiro, Odile, Dillies, Marie-Agnès, Guigon, Ghislaine, Coppee, Jean-Yves, David, Peter H, Scherf, Artur
出版 2005

Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans

由 Cleiss-Arnold, Jessica, Koechler, Sandrine, Proux, Caroline, Fardeau, Marie-Laure, Dillies, Marie-Agnès, Coppee, Jean-Yves, Arsène-Ploetze, Florence, Bertin, Philippe N
出版 2010

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

由 Balloy, Viviane, Varet, Hugo, Dillies, Marie-Agnès, Proux, Caroline, Jagla, Bernd, Coppée, Jean-Yves, Tabary, Olivier, Corvol, Harriet, Chignard, Michel, Guillot, Loïc
發表在 PLoS One (2015)

Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut

由 Raquin, Vincent, Merkling, Sarah Hélène, Gausson, Valérie, Moltini-Conclois, Isabelle, Frangeul, Lionel, Varet, Hugo, Dillies, Marie-Agnès, Saleh, Maria-Carla, Lambrechts, Louis
發表在 PLoS Negl Trop Dis (2017)

A Putative Regulatory Genetic Locus Modulates Virulence in the Pathogen Leptospira interrogans

由 Eshghi, Azad, Becam, Jérôme, Lambert, Ambroise, Sismeiro, Odile, Dillies, Marie-Agnès, Jagla, Bernd, Wunder, Elsio A., Ko, Albert I., Coppee, Jean-Yves, Goarant, Cyrille, Picardeau, Mathieu
出版 2014

Identification of RNA partners of viral proteins in infected cells

由 Komarova, Anastassia V., Combredet, Chantal, Sismeiro, Odile, Dillies, Marie-Agnès, Jagla, Bernd, Sanchez David, Raul Yusef, Vabret, Nicolas, Coppée, Jean-Yves, Vidalain, Pierre-Olivier, Tangy, Frédéric
出版 2013

Endoplasmic Reticulum Stress-Sensing Mechanism Is Activated in Entamoeba histolytica upon Treatment with Nitric Oxide

由 Santi-Rocca, Julien, Smith, Sherri, Weber, Christian, Pineda, Erika, Hon, Chung-Chau, Saavedra, Emma, Olivos-García, Alfonso, Rousseau, Sandrine, Dillies, Marie-Agnès, Coppée, Jean-Yves, Guillén, Nancy
出版 2012

Comparison of biofilm formation and motility processes in arsenic‐resistant Thiomonas spp. strains revealed divergent response to arsenite

由 Farasin, Julien, Koechler, Sandrine, Varet, Hugo, Deschamps, Julien, Dillies, Marie‐Agnès, Proux, Caroline, Erhardt, Mathieu, Huber, Aline, Jagla, Bernd, Briandet, Romain, Coppée, Jean‐Yves, Arsène‐Ploetze, Florence
發表在 Microb Biotechnol (2017)