SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

Por Varet, Hugo, Brillet-Guéguen, Loraine, Coppée, Jean-Yves, Dillies, Marie-Agnès
Publicado no PLoS One (2016)

Identified members of the Streptomyces lividans AdpA regulon involved in differentiation and secondary metabolism

Por Guyet, Aurélie, Benaroudj, Nadia, Proux, Caroline, Gominet, Myriam, Coppée, Jean-Yves, Mazodier, Philippe
Publicado em 2014

The PfAlba1 RNA-binding protein is an important regulator of translational timing in Plasmodium falciparum blood stages

Por Vembar, Shruthi Sridhar, Macpherson, Cameron Ross, Sismeiro, Odile, Coppée, Jean-Yves, Scherf, Artur
Publicado no Genome Biol (2015)

Distinct Transcriptional Signatures of Bone Marrow-Derived C57BL/6 and DBA/2 Dendritic Leucocytes Hosting Live Leishmania amazonensis Amastigotes

Por Giraud, Emilie, Lecoeur, Hervé, Soubigou, Guillaume, Coppée, Jean-Yves, Milon, Geneviève, Prina, Eric, Lang, Thierry
Publicado em 2012

The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system

Por Sahr, Tobias, Rusniok, Christophe, Impens, Francis, Oliva, Giulia, Sismeiro, Odile, Coppée, Jean-Yves, Buchrieser, Carmen
Publicado no PLoS Genet (2017)

The Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence

Por van Schaik, Willem, Château, Alice, Dillies, Marie-Agnès, Coppée, Jean-Yves, Sonenshein, Abraham L., Fouet, Agnès
Publicado em 2009

Rae1/YacP, a new endoribonuclease involved in ribosome‐dependent mRNA decay in Bacillus subtilis

Por Leroy, Magali, Piton, Jérémie, Gilet, Laetitia, Pellegrini, Olivier, Proux, Caroline, Coppée, Jean‐Yves, Figaro, Sabine, Condon, Ciarán
Publicado no EMBO J (2017)

Induction of the Cpx Envelope Stress Pathway Contributes to Escherichia coli Tolerance to Antimicrobial Peptides

Por Audrain, Bianca, Ferrières, Lionel, Zairi, Amira, Soubigou, Guillaume, Dobson, Curtis, Coppée, Jean-Yves, Beloin, Christophe, Ghigo, Jean-Marc
Publicado em 2013

Overexpression of the Heterochromatinization Factor BAHD1 in HEK293 Cells Differentially Reshapes the DNA Methylome on Autosomes and X Chromosome

Por Libertini, Emanuele, Lebreton, Alice, Lakisic, Goran, Dillies, Marie-Agnès, Beck, Stephan, Coppée, Jean-Yves, Cossart, Pascale, Bierne, Hélène
Publicado no Front Genet (2015)

Transcriptional signatures of BALB/c mouse macrophages housing multiplying Leishmania amazonensis amastigotes

Por Fortéa, José Osorio y, de La Llave, Emilie, Regnault, Béatrice, Coppée, Jean-Yves, Milon, Geneviève, Lang, Thierry, Prina, Eric
Publicado em 2009

Identification of the Virulence Landscape Essential for Entamoeba histolytica Invasion of the Human Colon

Por Thibeaux, Roman, Weber, Christian, Hon, Chung-Chau, Dillies, Marie-Agnès, Avé, Patrick, Coppée, Jean-Yves, Labruyère, Elisabeth, Guillén, Nancy
Publicado em 2013

Field-based evidence of fast and global increase of Plasmodium falciparum drug-resistance by DNA-microarrays and PCR/RFLP in Niger

Por Ibrahim, Maman Laminou, Steenkeste, Nicolas, Khim, Nimol, Adam, Hadiza Hassane, Konaté, Lassana, Coppée, Jean-Yves, Ariey, Fredéric, Duchemin, Jean-Bernard
Publicado em 2009

Unusual composition of a yeast chromosome arm is associated with its delayed replication

Por Payen, Célia, Fischer, Gilles, Marck, Christian, Proux, Caroline, Sherman, David James, Coppée, Jean-Yves, Johnston, Mark, Dujon, Bernard, Neuvéglise, Cécile
Publicado em 2009

The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila

Por Fagegaltier, Delphine, Bougé, Anne-Laure, Berry, Bassam, Poisot, Émilie, Sismeiro, Odile, Coppée, Jean-Yves, Théodore, Laurent, Voinnet, Olivier, Antoniewski, Christophe
Publicado em 2009

Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae)

Por Dittami, Simon M, Proux, Caroline, Rousvoal, Sylvie, Peters, Akira F, Cock, J Mark, Coppée, Jean-Yves, Boyen, Catherine, Tonon, Thierry
Publicado em 2011

RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans

Por Dhamgaye, Sanjiveeni, Bernard, Maria, Lelandais, Gaelle, Sismeiro, Odile, Lemoine, Sophie, Coppée, Jean-Yves, Le Crom, Stéphane, Prasad, Rajendra, Devaux, Frédéric
Publicado em 2012

Starvation, Together with the SOS Response, Mediates High Biofilm-Specific Tolerance to the Fluoroquinolone Ofloxacin

Por Bernier, Steve P., Lebeaux, David, DeFrancesco, Alicia S., Valomon, Amandine, Soubigou, Guillaume, Coppée, Jean-Yves, Ghigo, Jean-Marc, Beloin, Christophe
Publicado em 2013

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment

Por Weber, Christian, Koutero, Mikael, Dillies, Marie-Agnes, Varet, Hugo, Lopez-Camarillo, Cesar, Coppée, Jean Yves, Hon, Chung-Chau, Guillén, Nancy
Publicado no Sci Rep (2016)

Stress by Heat Shock Induces Massive Down Regulation of Genes and Allows Differential Allelic Expression of the Gal/GalNAc Lectin in Entamoeba histolytica

Por Weber, Christian, Guigon, Ghislaine, Bouchier, Christiane, Frangeul, Lionel, Moreira, Sandrine, Sismeiro, Odile, Gouyette, Catherine, Mirelman, David, Coppee, Jean Yves, Guillén, Nancy
Publicado em 2006

Expanding the RpoS/σ(S)-Network by RNA Sequencing and Identification of σ(S)-Controlled Small RNAs in Salmonella

Por Lévi-Meyrueis, Corinne, Monteil, Véronique, Sismeiro, Odile, Dillies, Marie-Agnès, Monot, Marc, Jagla, Bernd, Coppée, Jean-Yves, Dupuy, Bruno, Norel, Françoise
Publicado em 2014