SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

по Varet, Hugo, Brillet-Guéguen, Loraine, Coppée, Jean-Yves, Dillies, Marie-Agnès
Опубликовано в: PLoS One (2016)

Non-Pathogenic Mopeia Virus Induces More Robust Activation of Plasmacytoid Dendritic Cells than Lassa Virus

по Schaeffer, Justine, Reynard, Stéphanie, Carnec, Xavier, Pietrosemoli, Natalia, Dillies, Marie-Agnès, Baize, Sylvain
Опубликовано в: Viruses (2019)

The Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence

по van Schaik, Willem, Château, Alice, Dillies, Marie-Agnès, Coppée, Jean-Yves, Sonenshein, Abraham L., Fouet, Agnès
Опубликовано 2009

Gene expression analysis in EBV-infected ataxia-telangiectasia cell lines by RNA-sequencing reveals protein synthesis defect and immune abnormalities

по Tatfi, Moussab, Perthame, Emeline, Hillion, Kenzo-Hugo, Dillies, Marie-Agnès, Menager, Hervé, Hermine, Olivier, Suarez, Felipe
Опубликовано в: Orphanet J Rare Dis (2021)

Lassa virus activates myeloid dendritic cells but suppresses their ability to stimulate T cells

по Schaeffer, Justine, Carnec, Xavier, Reynard, Stéphanie, Mateo, Mathieu, Picard, Caroline, Pietrosemoli, Natalia, Dillies, Marie-Agnès, Baize, Sylvain
Опубликовано в: PLoS Pathog (2018)

Genomic determinants for initiation and length of natural antisense transcripts in Entamoeba histolytica

по Mornico, Damien, Hon, Chung-Chau, Koutero, Mikael, Weber, Christian, Coppee, Jean-Yves, Dillies, Marie-Agnes, Guillen, Nancy
Опубликовано в: Sci Rep (2020)

Overexpression of the Heterochromatinization Factor BAHD1 in HEK293 Cells Differentially Reshapes the DNA Methylome on Autosomes and X Chromosome

по Libertini, Emanuele, Lebreton, Alice, Lakisic, Goran, Dillies, Marie-Agnès, Beck, Stephan, Coppée, Jean-Yves, Cossart, Pascale, Bierne, Hélène
Опубликовано в: Front Genet (2015)

MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets

по Hourdel, Véronique, Volant, Stevenn, O’Brien, Darragh P., Chenal, Alexandre, Chamot-Rooke, Julia, Dillies, Marie-Agnès, Brier, Sébastien
Опубликовано в: Bioinformatics (2016)

Identification of the Virulence Landscape Essential for Entamoeba histolytica Invasion of the Human Colon

по Thibeaux, Roman, Weber, Christian, Hon, Chung-Chau, Dillies, Marie-Agnès, Avé, Patrick, Coppée, Jean-Yves, Labruyère, Elisabeth, Guillén, Nancy
Опубликовано 2013

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment

по Weber, Christian, Koutero, Mikael, Dillies, Marie-Agnes, Varet, Hugo, Lopez-Camarillo, Cesar, Coppée, Jean Yves, Hon, Chung-Chau, Guillén, Nancy
Опубликовано в: Sci Rep (2016)

Expanding the RpoS/σ(S)-Network by RNA Sequencing and Identification of σ(S)-Controlled Small RNAs in Salmonella

по Lévi-Meyrueis, Corinne, Monteil, Véronique, Sismeiro, Odile, Dillies, Marie-Agnès, Monot, Marc, Jagla, Bernd, Coppée, Jean-Yves, Dupuy, Bruno, Norel, Françoise
Опубликовано 2014

Temporal transcriptomic response during arsenic stress in <it>Herminiimonas arsenicoxydans</it>

по Arsène-Ploetze Florence, Coppee Jean-Yves, Dillies Marie-Agnès, Proux Caroline, Fardeau Marie-Laure, Koechler Sandrine, Cleiss-Arnold Jessica, Bertin Philippe N
Опубликовано 2010-12-01

Transcriptome analysis of antigenic variation in Plasmodium falciparum - var silencing is not dependent on antisense RNA

по Ralph, Stuart A, Bischoff, Emmanuel, Mattei, Denise, Sismeiro, Odile, Dillies, Marie-Agnès, Guigon, Ghislaine, Coppee, Jean-Yves, David, Peter H, Scherf, Artur
Опубликовано 2005

Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans

по Cleiss-Arnold, Jessica, Koechler, Sandrine, Proux, Caroline, Fardeau, Marie-Laure, Dillies, Marie-Agnès, Coppee, Jean-Yves, Arsène-Ploetze, Florence, Bertin, Philippe N
Опубликовано 2010

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

по Balloy, Viviane, Varet, Hugo, Dillies, Marie-Agnès, Proux, Caroline, Jagla, Bernd, Coppée, Jean-Yves, Tabary, Olivier, Corvol, Harriet, Chignard, Michel, Guillot, Loïc
Опубликовано в: PLoS One (2015)

Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut

по Raquin, Vincent, Merkling, Sarah Hélène, Gausson, Valérie, Moltini-Conclois, Isabelle, Frangeul, Lionel, Varet, Hugo, Dillies, Marie-Agnès, Saleh, Maria-Carla, Lambrechts, Louis
Опубликовано в: PLoS Negl Trop Dis (2017)

A Putative Regulatory Genetic Locus Modulates Virulence in the Pathogen Leptospira interrogans

по Eshghi, Azad, Becam, Jérôme, Lambert, Ambroise, Sismeiro, Odile, Dillies, Marie-Agnès, Jagla, Bernd, Wunder, Elsio A., Ko, Albert I., Coppee, Jean-Yves, Goarant, Cyrille, Picardeau, Mathieu
Опубликовано 2014

Identification of RNA partners of viral proteins in infected cells

по Komarova, Anastassia V., Combredet, Chantal, Sismeiro, Odile, Dillies, Marie-Agnès, Jagla, Bernd, Sanchez David, Raul Yusef, Vabret, Nicolas, Coppée, Jean-Yves, Vidalain, Pierre-Olivier, Tangy, Frédéric
Опубликовано 2013

Endoplasmic Reticulum Stress-Sensing Mechanism Is Activated in Entamoeba histolytica upon Treatment with Nitric Oxide

по Santi-Rocca, Julien, Smith, Sherri, Weber, Christian, Pineda, Erika, Hon, Chung-Chau, Saavedra, Emma, Olivos-García, Alfonso, Rousseau, Sandrine, Dillies, Marie-Agnès, Coppée, Jean-Yves, Guillén, Nancy
Опубликовано 2012

Comparison of biofilm formation and motility processes in arsenic‐resistant Thiomonas spp. strains revealed divergent response to arsenite

по Farasin, Julien, Koechler, Sandrine, Varet, Hugo, Deschamps, Julien, Dillies, Marie‐Agnès, Proux, Caroline, Erhardt, Mathieu, Huber, Aline, Jagla, Bernd, Briandet, Romain, Coppée, Jean‐Yves, Arsène‐Ploetze, Florence
Опубликовано в: Microb Biotechnol (2017)