SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

od Varet, Hugo, Brillet-Guéguen, Loraine, Coppée, Jean-Yves, Dillies, Marie-Agnès
Wydane w PLoS One (2016)

Non-Pathogenic Mopeia Virus Induces More Robust Activation of Plasmacytoid Dendritic Cells than Lassa Virus

od Schaeffer, Justine, Reynard, Stéphanie, Carnec, Xavier, Pietrosemoli, Natalia, Dillies, Marie-Agnès, Baize, Sylvain
Wydane w Viruses (2019)

The Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence

od van Schaik, Willem, Château, Alice, Dillies, Marie-Agnès, Coppée, Jean-Yves, Sonenshein, Abraham L., Fouet, Agnès
Wydane 2009

Gene expression analysis in EBV-infected ataxia-telangiectasia cell lines by RNA-sequencing reveals protein synthesis defect and immune abnormalities

od Tatfi, Moussab, Perthame, Emeline, Hillion, Kenzo-Hugo, Dillies, Marie-Agnès, Menager, Hervé, Hermine, Olivier, Suarez, Felipe
Wydane w Orphanet J Rare Dis (2021)

Lassa virus activates myeloid dendritic cells but suppresses their ability to stimulate T cells

od Schaeffer, Justine, Carnec, Xavier, Reynard, Stéphanie, Mateo, Mathieu, Picard, Caroline, Pietrosemoli, Natalia, Dillies, Marie-Agnès, Baize, Sylvain
Wydane w PLoS Pathog (2018)

Genomic determinants for initiation and length of natural antisense transcripts in Entamoeba histolytica

od Mornico, Damien, Hon, Chung-Chau, Koutero, Mikael, Weber, Christian, Coppee, Jean-Yves, Dillies, Marie-Agnes, Guillen, Nancy
Wydane w Sci Rep (2020)

Overexpression of the Heterochromatinization Factor BAHD1 in HEK293 Cells Differentially Reshapes the DNA Methylome on Autosomes and X Chromosome

od Libertini, Emanuele, Lebreton, Alice, Lakisic, Goran, Dillies, Marie-Agnès, Beck, Stephan, Coppée, Jean-Yves, Cossart, Pascale, Bierne, Hélène
Wydane w Front Genet (2015)

MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets

od Hourdel, Véronique, Volant, Stevenn, O’Brien, Darragh P., Chenal, Alexandre, Chamot-Rooke, Julia, Dillies, Marie-Agnès, Brier, Sébastien
Wydane w Bioinformatics (2016)

Identification of the Virulence Landscape Essential for Entamoeba histolytica Invasion of the Human Colon

od Thibeaux, Roman, Weber, Christian, Hon, Chung-Chau, Dillies, Marie-Agnès, Avé, Patrick, Coppée, Jean-Yves, Labruyère, Elisabeth, Guillén, Nancy
Wydane 2013

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment

od Weber, Christian, Koutero, Mikael, Dillies, Marie-Agnes, Varet, Hugo, Lopez-Camarillo, Cesar, Coppée, Jean Yves, Hon, Chung-Chau, Guillén, Nancy
Wydane w Sci Rep (2016)

Expanding the RpoS/σ(S)-Network by RNA Sequencing and Identification of σ(S)-Controlled Small RNAs in Salmonella

od Lévi-Meyrueis, Corinne, Monteil, Véronique, Sismeiro, Odile, Dillies, Marie-Agnès, Monot, Marc, Jagla, Bernd, Coppée, Jean-Yves, Dupuy, Bruno, Norel, Françoise
Wydane 2014

Temporal transcriptomic response during arsenic stress in <it>Herminiimonas arsenicoxydans</it>

od Arsène-Ploetze Florence, Coppee Jean-Yves, Dillies Marie-Agnès, Proux Caroline, Fardeau Marie-Laure, Koechler Sandrine, Cleiss-Arnold Jessica, Bertin Philippe N
Wydane 2010-12-01

Transcriptome analysis of antigenic variation in Plasmodium falciparum - var silencing is not dependent on antisense RNA

od Ralph, Stuart A, Bischoff, Emmanuel, Mattei, Denise, Sismeiro, Odile, Dillies, Marie-Agnès, Guigon, Ghislaine, Coppee, Jean-Yves, David, Peter H, Scherf, Artur
Wydane 2005

Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans

od Cleiss-Arnold, Jessica, Koechler, Sandrine, Proux, Caroline, Fardeau, Marie-Laure, Dillies, Marie-Agnès, Coppee, Jean-Yves, Arsène-Ploetze, Florence, Bertin, Philippe N
Wydane 2010

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

od Balloy, Viviane, Varet, Hugo, Dillies, Marie-Agnès, Proux, Caroline, Jagla, Bernd, Coppée, Jean-Yves, Tabary, Olivier, Corvol, Harriet, Chignard, Michel, Guillot, Loïc
Wydane w PLoS One (2015)

Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut

od Raquin, Vincent, Merkling, Sarah Hélène, Gausson, Valérie, Moltini-Conclois, Isabelle, Frangeul, Lionel, Varet, Hugo, Dillies, Marie-Agnès, Saleh, Maria-Carla, Lambrechts, Louis
Wydane w PLoS Negl Trop Dis (2017)

A Putative Regulatory Genetic Locus Modulates Virulence in the Pathogen Leptospira interrogans

od Eshghi, Azad, Becam, Jérôme, Lambert, Ambroise, Sismeiro, Odile, Dillies, Marie-Agnès, Jagla, Bernd, Wunder, Elsio A., Ko, Albert I., Coppee, Jean-Yves, Goarant, Cyrille, Picardeau, Mathieu
Wydane 2014

Identification of RNA partners of viral proteins in infected cells

od Komarova, Anastassia V., Combredet, Chantal, Sismeiro, Odile, Dillies, Marie-Agnès, Jagla, Bernd, Sanchez David, Raul Yusef, Vabret, Nicolas, Coppée, Jean-Yves, Vidalain, Pierre-Olivier, Tangy, Frédéric
Wydane 2013

Endoplasmic Reticulum Stress-Sensing Mechanism Is Activated in Entamoeba histolytica upon Treatment with Nitric Oxide

od Santi-Rocca, Julien, Smith, Sherri, Weber, Christian, Pineda, Erika, Hon, Chung-Chau, Saavedra, Emma, Olivos-García, Alfonso, Rousseau, Sandrine, Dillies, Marie-Agnès, Coppée, Jean-Yves, Guillén, Nancy
Wydane 2012

Comparison of biofilm formation and motility processes in arsenic‐resistant Thiomonas spp. strains revealed divergent response to arsenite

od Farasin, Julien, Koechler, Sandrine, Varet, Hugo, Deschamps, Julien, Dillies, Marie‐Agnès, Proux, Caroline, Erhardt, Mathieu, Huber, Aline, Jagla, Bernd, Briandet, Romain, Coppée, Jean‐Yves, Arsène‐Ploetze, Florence
Wydane w Microb Biotechnol (2017)