SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

di Varet, Hugo, Brillet-Guéguen, Loraine, Coppée, Jean-Yves, Dillies, Marie-Agnès
Pubblicato in PLoS One (2016)

Non-Pathogenic Mopeia Virus Induces More Robust Activation of Plasmacytoid Dendritic Cells than Lassa Virus

di Schaeffer, Justine, Reynard, Stéphanie, Carnec, Xavier, Pietrosemoli, Natalia, Dillies, Marie-Agnès, Baize, Sylvain
Pubblicato in Viruses (2019)

The Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence

di van Schaik, Willem, Château, Alice, Dillies, Marie-Agnès, Coppée, Jean-Yves, Sonenshein, Abraham L., Fouet, Agnès
Pubblicazione 2009

Gene expression analysis in EBV-infected ataxia-telangiectasia cell lines by RNA-sequencing reveals protein synthesis defect and immune abnormalities

di Tatfi, Moussab, Perthame, Emeline, Hillion, Kenzo-Hugo, Dillies, Marie-Agnès, Menager, Hervé, Hermine, Olivier, Suarez, Felipe
Pubblicato in Orphanet J Rare Dis (2021)

Lassa virus activates myeloid dendritic cells but suppresses their ability to stimulate T cells

di Schaeffer, Justine, Carnec, Xavier, Reynard, Stéphanie, Mateo, Mathieu, Picard, Caroline, Pietrosemoli, Natalia, Dillies, Marie-Agnès, Baize, Sylvain
Pubblicato in PLoS Pathog (2018)

Genomic determinants for initiation and length of natural antisense transcripts in Entamoeba histolytica

di Mornico, Damien, Hon, Chung-Chau, Koutero, Mikael, Weber, Christian, Coppee, Jean-Yves, Dillies, Marie-Agnes, Guillen, Nancy
Pubblicato in Sci Rep (2020)

Overexpression of the Heterochromatinization Factor BAHD1 in HEK293 Cells Differentially Reshapes the DNA Methylome on Autosomes and X Chromosome

di Libertini, Emanuele, Lebreton, Alice, Lakisic, Goran, Dillies, Marie-Agnès, Beck, Stephan, Coppée, Jean-Yves, Cossart, Pascale, Bierne, Hélène
Pubblicato in Front Genet (2015)

MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets

di Hourdel, Véronique, Volant, Stevenn, O’Brien, Darragh P., Chenal, Alexandre, Chamot-Rooke, Julia, Dillies, Marie-Agnès, Brier, Sébastien
Pubblicato in Bioinformatics (2016)

Identification of the Virulence Landscape Essential for Entamoeba histolytica Invasion of the Human Colon

di Thibeaux, Roman, Weber, Christian, Hon, Chung-Chau, Dillies, Marie-Agnès, Avé, Patrick, Coppée, Jean-Yves, Labruyère, Elisabeth, Guillén, Nancy
Pubblicazione 2013

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment

di Weber, Christian, Koutero, Mikael, Dillies, Marie-Agnes, Varet, Hugo, Lopez-Camarillo, Cesar, Coppée, Jean Yves, Hon, Chung-Chau, Guillén, Nancy
Pubblicato in Sci Rep (2016)

Expanding the RpoS/σ(S)-Network by RNA Sequencing and Identification of σ(S)-Controlled Small RNAs in Salmonella

di Lévi-Meyrueis, Corinne, Monteil, Véronique, Sismeiro, Odile, Dillies, Marie-Agnès, Monot, Marc, Jagla, Bernd, Coppée, Jean-Yves, Dupuy, Bruno, Norel, Françoise
Pubblicazione 2014

Temporal transcriptomic response during arsenic stress in <it>Herminiimonas arsenicoxydans</it>

di Arsène-Ploetze Florence, Coppee Jean-Yves, Dillies Marie-Agnès, Proux Caroline, Fardeau Marie-Laure, Koechler Sandrine, Cleiss-Arnold Jessica, Bertin Philippe N
Pubblicazione 2010-12-01

Transcriptome analysis of antigenic variation in Plasmodium falciparum - var silencing is not dependent on antisense RNA

di Ralph, Stuart A, Bischoff, Emmanuel, Mattei, Denise, Sismeiro, Odile, Dillies, Marie-Agnès, Guigon, Ghislaine, Coppee, Jean-Yves, David, Peter H, Scherf, Artur
Pubblicazione 2005

Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans

di Cleiss-Arnold, Jessica, Koechler, Sandrine, Proux, Caroline, Fardeau, Marie-Laure, Dillies, Marie-Agnès, Coppee, Jean-Yves, Arsène-Ploetze, Florence, Bertin, Philippe N
Pubblicazione 2010

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

di Balloy, Viviane, Varet, Hugo, Dillies, Marie-Agnès, Proux, Caroline, Jagla, Bernd, Coppée, Jean-Yves, Tabary, Olivier, Corvol, Harriet, Chignard, Michel, Guillot, Loïc
Pubblicato in PLoS One (2015)

Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut

di Raquin, Vincent, Merkling, Sarah Hélène, Gausson, Valérie, Moltini-Conclois, Isabelle, Frangeul, Lionel, Varet, Hugo, Dillies, Marie-Agnès, Saleh, Maria-Carla, Lambrechts, Louis
Pubblicato in PLoS Negl Trop Dis (2017)

A Putative Regulatory Genetic Locus Modulates Virulence in the Pathogen Leptospira interrogans

di Eshghi, Azad, Becam, Jérôme, Lambert, Ambroise, Sismeiro, Odile, Dillies, Marie-Agnès, Jagla, Bernd, Wunder, Elsio A., Ko, Albert I., Coppee, Jean-Yves, Goarant, Cyrille, Picardeau, Mathieu
Pubblicazione 2014

Identification of RNA partners of viral proteins in infected cells

di Komarova, Anastassia V., Combredet, Chantal, Sismeiro, Odile, Dillies, Marie-Agnès, Jagla, Bernd, Sanchez David, Raul Yusef, Vabret, Nicolas, Coppée, Jean-Yves, Vidalain, Pierre-Olivier, Tangy, Frédéric
Pubblicazione 2013

Endoplasmic Reticulum Stress-Sensing Mechanism Is Activated in Entamoeba histolytica upon Treatment with Nitric Oxide

di Santi-Rocca, Julien, Smith, Sherri, Weber, Christian, Pineda, Erika, Hon, Chung-Chau, Saavedra, Emma, Olivos-García, Alfonso, Rousseau, Sandrine, Dillies, Marie-Agnès, Coppée, Jean-Yves, Guillén, Nancy
Pubblicazione 2012

Comparison of biofilm formation and motility processes in arsenic‐resistant Thiomonas spp. strains revealed divergent response to arsenite

di Farasin, Julien, Koechler, Sandrine, Varet, Hugo, Deschamps, Julien, Dillies, Marie‐Agnès, Proux, Caroline, Erhardt, Mathieu, Huber, Aline, Jagla, Bernd, Briandet, Romain, Coppée, Jean‐Yves, Arsène‐Ploetze, Florence
Pubblicato in Microb Biotechnol (2017)