Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq

Por Liu, Ruolin, Dickerson, Julie
Publicado no PLoS Comput Biol (2017)

OmicsViz: Cytoscape plug-in for visualizing omics data across species

Por Xia, Tian, Dickerson, Julie A.
Publicado em 2008

PathwayAccess: CellDesigner plugins for pathway databases

Por Van Hemert, John L., Dickerson, Julie A.
Publicado em 2010

OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data

Por Xia, Tian, Hemert, John V., Dickerson, Julie A.
Publicado em 2010

CytoModeler: a tool for bridging large-scale network analysis and dynamic quantitative modeling

Por Xia, Tian, Van Hemert, John, Dickerson, Julie A.
Publicado em 2011

Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities

Por Fu, Yao, Jarboe, Laura R, Dickerson, Julie A
Publicado em 2011

Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems

Por Liu, Ruolin, Loraine, Ann E, Dickerson, Julie A
Publicado no BMC Bioinformatics (2014)

DiffSLC: A graph centrality method to detect essential proteins of a protein-protein interaction network

Por Mistry, Divya, Wise, Roger P., Dickerson, Julie A.
Publicado no PLoS One (2017)

A computational platform to maintain and migrate manual functional annotations for BioCyc databases

Por Walsh, Jesse R, Sen, Taner Z, Dickerson, Julie A
Publicado em 2014

<it>Arabidopsis </it>gene co-expression network and its functional modules

Por Dash Sudhansu, Van Hemert John L, Mao Linyong, Dickerson Julie A
Publicado em 2009-10-01

Arabidopsis gene co-expression network and its functional modules

Por Mao, Linyong, Van Hemert, John L, Dash, Sudhansu, Dickerson, Julie A
Publicado em 2009

Network motif comparison rationalizes Sec1/Munc18-SNARE regulation mechanism in exocytosis

Por Xia, Tian, Tong, Jiansong, Rathore, Shailendra S, Gu, Xun, Dickerson, Julie A
Publicado em 2012

MetNetGE: interactive views of biological networks and ontologies

Por Jia, Ming, Choi, Suh-Yeon, Reiners, Dirk, Wurtele, Eve S, Dickerson, Julie A
Publicado em 2010

Plantmetabolomics.org: mass spectrometry-based Arabidopsis metabolomics—database and tools update

Por Bais, Preeti, Moon-Quanbeck, Stephanie M., Nikolau, Basil J., Dickerson, Julie A.
Publicado em 2012

PLEXdb: gene expression resources for plants and plant pathogens

Por Dash, Sudhansu, Van Hemert, John, Hong, Lu, Wise, Roger P., Dickerson, Julie A.
Publicado em 2012

VitisNet: “Omics” Integration through Grapevine Molecular Networks

Por Grimplet, Jérôme, Cramer, Grant R., Dickerson, Julie A., Mathiason, Kathy, Van Hemert, John, Fennell, Anne Y.
Publicado em 2009

BarleyBase—an expression profiling database for plant genomics

Por Shen, Lishuang, Gong, Jian, Caldo, Rico A., Nettleton, Dan, Cook, Dianne, Wise, Roger P., Dickerson, Julie A.
Publicado em 2005

Transcriptomic Analysis of Carboxylic Acid Challenge in Escherichia coli: Beyond Membrane Damage

Por Royce, Liam A., Boggess, Erin, Fu, Yao, Liu, Ping, Shanks, Jacqueline V., Dickerson, Julie, Jarboe, Laura R.
Publicado em 2014

The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize

Por Walsh, Jesse R., Schaeffer, Mary L., Zhang, Peifen, Rhee, Seung Y., Dickerson, Julie A., Sen, Taner Z.
Publicado no BMC Syst Biol (2016)

Comparative analysis of grapevine whole-genome gene predictions, functional annotation, categorization and integration of the predicted gene sequences

Por Grimplet, Jérôme, Van Hemert, John, Carbonell-Bejerano, Pablo, Díaz-Riquelme, José, Dickerson, Julie, Fennell, Anne, Pezzotti, Mario, Martínez-Zapater, José M
Publicado em 2012