Extracting Semantic Lexicons from Discharge Summaries using Machine Learning and the C-Value Method

door Jiang, Min, Denny, Josh C., Tang, Buzhou, Cao, Hongxin, Xu, Hua
Gepubliceerd in 2012

Clinical and Genetic Factors Associated With Cutaneous Squamous Cell Carcinoma in Kidney and Heart Transplant Recipients

door Sanders, M. Lee, Karnes, Jason H., Denny, Josh C., Roden, Dan M., Ikizler, T. Alp, Birdwell, Kelly A.
Gepubliceerd in Transplant Direct (2015)

PRECISION MEDICINE: DATA AND DISCOVERY FOR IMPROVED HEALTH AND THERAPY

door MORGAN, ALEXANDER A., CRAWFORD, DANA C., DENNY, JOSH C., MOONEY, SEAN D., ARONOW, BRUCE J., BRENNER, STEVEN E.
Gepubliceerd in Pac Symp Biocomput (2017)

Prevalence and Clinical Significance of Discrepancies within Three Computerized Pre-Admission Medication Lists

door Peterson, Josh F., Shi, Yaping, Denny, Josh C., Matheny, Michael E., Schildcrout, Jonathan S., Waitman, Lemuel R., Miller, Randolph A.
Gepubliceerd in 2010

Syntactic parsing of clinical text: guideline and corpus development with handling ill-formed sentences

door Fan, Jung-wei, Yang, Elly W, Jiang, Min, Prasad, Rashmi, Loomis, Richard M, Zisook, Daniel S, Denny, Josh C, Xu, Hua, Huang, Yang
Gepubliceerd in 2013

Clinically actionable genotypes among 10,000 patients with preemptive pharmacogenomic testing

door Van Driest, Sara L., Shi, Yaping, Bowton, Erica A., Schildcrout, Jonathan S., Peterson, Josh F., Pulley, Jill, Denny, Josh C., Roden, Dan M.
Gepubliceerd in 2013

Integrating EMR-Linked and In Vivo Functional Genetic Data to Identify New Genotype-Phenotype Associations

door Mosley, Jonathan D., Van Driest, Sara L., Weeke, Peter E., Delaney, Jessica T., Wells, Quinn S., Bastarache, Lisa, Roden, Dan M., Denny, Josh C.
Gepubliceerd in 2014

Extracting and Integrating Data from Entire Electronic Health Records for Detecting Colorectal Cancer Cases

door Xu, Hua, Fu, Zhenming, Shah, Anushi, Chen, Yukun, Peterson, Neeraja B., Chen, Qingxia, Mani, Subramani, Levy, Mia A., Dai, Qi, Denny, Josh C.
Gepubliceerd in 2011

Clinical Features Associated with Nascent Left Ventricular Diastolic Dysfunction in a Population Aged 40–55 Years

door Mosley, Jonathan D., Levinson, Rebecca T., Brittain, Evan L., Gupta, Deepak K., Farber-Eger, Eric, Shaffer, Christian M., Denny, Josh C., Roden, Dan M., Wells, Quinn S.
Gepubliceerd in Am J Cardiol (2018)

Electronic Health Record Design and Implementation for Pharmacogenomics: a Local Perspective

door Peterson, Josh F., Bowton, Erica, Field, Julie R., Beller, Marc, Mitchell, Jennifer, Schildcrout, Jonathan, Gregg, William, Johnson, Kevin, Jirjis, Jim N, Roden, Dan M., Pulley, Jill M., Denny, Josh C.
Gepubliceerd in 2013

Rare Variants in the Gene ALPL That Cause Hypophosphatasia Are Strongly Associated With Ovarian and Uterine Disorders

door Dahir, Kathryn M, Tilden, Daniel R, Warner, Jeremy L, Bastarache, Lisa, Smith, Derek K, Gifford, Aliya, Ramirez, Andrea H, Simmons, Jill S, Black, Margo M, Newman, John H, Denny, Josh C
Gepubliceerd in J Clin Endocrinol Metab (2018)

Physician Response to Implementation of Genotype-Tailored Antiplatelet Therapy

door Peterson, Josh F., Field, Julie R., Unertl, Kim, Schildcrout, Jonathan S., Johnson, Daniel C., Shi, Yaping, Danciu, Ioana, Cleator, John H., Pulley, Jill M., McPherson, John A., Denny, Josh C., Laposata, Michael, Roden, Dan M., Johnson, Kevin B.
Gepubliceerd in Clin Pharmacol Ther (2016)

Use of a DNA Biobank Linked to Electronic Medical Records to Characterize Pharmacogenomic Predictors of Tacrolimus Dose Requirement in Kidney Transplant Recipients

door Birdwell, Kelly A., Grady, Ben, Choi, Leena, Xu, Hua, Bian, Aihua, Denny, Josh C., Jiang, Min, Vranic, Gayle, Basford, Melissa, Cowan, James D., Richardson, Danielle M., Robinson, Melanie P., Ikizler, T. Alp, Ritchie, Marylyn D., Stein, C. Michael, Haas, David W.
Gepubliceerd in 2012

Lossless integration of multiple electronic health records for identifying pleiotropy using summary statistics

door Li, Ruowang, Duan, Rui, Zhang, Xinyuan, Lumley, Thomas, Pendergrass, Sarah, Bauer, Christopher, Hakonarson, Hakon, Carrell, David S., Smoller, Jordan W., Wei, Wei-Qi, Carroll, Robert, Velez Edwards, Digna R., Wiesner, Georgia, Sleiman, Patrick, Denny, Josh C., Mosley, Jonathan D., Ritchie, Marylyn D., Chen, Yong, Moore, Jason H.
Gepubliceerd in Nat Commun (2021)

CTNNA3 and SEMA3D: promising loci for asthma exacerbation identified through multiple GWAS

door McGeachie, Michael J., Wu, Ann C., Tse, Sze Man, Clemmer, George L., Sordillo, Joanne, Himes, Blanca E., Lasky-Su, Jessica, Chase, Robert P., Martinez, Fernando D., Weeke, Peter, Shaffer, Christian M., Xu, Hua, Denny, Josh C., Roden, Dan M., Panettieri, Reynold A., Raby, Benjamin A., Weiss, Scott T., Tantisira, Kelan G.
Gepubliceerd in J Allergy Clin Immunol (2015)

Defining a Contemporary Ischemic Heart Disease Genetic Risk Profile using Historical Data

door Mosley, Jonathan D., Van Driest, Sara L., Wells, Quinn S., Shaffer, Christian M., Edwards, Todd L., Bastarache, Lisa, McCarty, Catherine A., Thompson, Will, Chute, Christopher G., Jarvik, Gail P., Crosslin, David R., Larson, Eric B., Kullo, Iftikhar J., Pacheco, Jennifer A., Peissig, Peggy L., Brilliant, Murray H., Linneman, James G., Denny, Josh C., Roden, Dan M.
Gepubliceerd in Circ Cardiovasc Genet (2016)

Investigating the Genetic Architecture of the PR Interval using Clinical Phenotypes

door Mosley, Jonathan D., Shoemaker, M. Benjamin, Wells, Quinn S., Darbar, Dawood, Shaffer, Christian M., Edwards, Todd L., Bastarache, Lisa, McCarty, Catherine A., Thompson, Will, Chute, Christopher G., Jarvik, Gail P., Crosslin, David R., Larson, Eric B., Kullo, Iftikhar J., Pacheco, Jennifer A., Peissig, Peggy L., Brilliant, Murray H., Linneman, James G., Witte, John S., Denny, Josh C., Roden, Dan M.
Gepubliceerd in Circ Cardiovasc Genet (2017)

Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network

door Hellwege, Jacklyn N., Stallings, Sarah, Torstenson, Eric S., Carroll, Robert, Borthwick, Kenneth M., Brilliant, Murray H., Crosslin, David, Gordon, Adam, Hripcsak, George, Jarvik, Gail P., Linneman, James G., Devi, Parimala, Peissig, Peggy L., Sleiman, Patrick A. M., Hakonarson, Hakon, Ritchie, Marylyn D., Verma, Shefali Setia, Shang, Ning, Denny, Josh C., Roden, Dan M., Velez Edwards, Digna R., Edwards, Todd L.
Gepubliceerd in Sci Rep (2019)

Mechanistic Phenotypes: An Aggregative Phenotyping Strategy to Identify Disease Mechanisms Using GWAS Data

door Mosley, Jonathan D., Van Driest, Sara L., Larkin, Emma K., Weeke, Peter E., Witte, John S., Wells, Quinn S., Karnes, Jason H., Guo, Yan, Bastarache, Lisa, Olson, Lana M., McCarty, Catherine A., Pacheco, Jennifer A., Jarvik, Gail P., Carrell, David S., Larson, Eric B., Crosslin, David R., Kullo, Iftikhar J., Tromp, Gerard, Kuivaniemi, Helena, Carey, David J., Ritchie, Marylyn D., Denny, Josh C., Roden, Dan M.
Gepubliceerd in 2013

Genome-Wide Association Study of Serum Creatinine Levels during Vancomycin Therapy

door Van Driest, Sara L., McGregor, Tracy L., Velez Edwards, Digna R., Saville, Ben R., Kitchner, Terrie E., Hebbring, Scott J., Brilliant, Murray, Jouni, Hayan, Kullo, Iftikhar J., Creech, C. Buddy, Kannankeril, Prince J., Vear, Susan I., Brothers, Kyle B., Bowton, Erica A., Shaffer, Christian M., Patel, Neelam, Delaney, Jessica T., Bradford, Yuki, Wilson, Sarah, Olson, Lana M., Crawford, Dana C., Potts, Amy L., Ho, Richard H., Roden, Dan M., Denny, Josh C.
Gepubliceerd in PLoS One (2015)