Allosterism and signal transfer in DNA

por Balaceanu, Alexandra, Pérez, Alberto, Dans, Pablo D, Orozco, Modesto
Publicado en Nucleic Acids Res (2018)

Exploring polymorphisms in B-DNA helical conformations

por Dans, Pablo D., Pérez, Alberto, Faustino, Ignacio, Lavery, Richard, Orozco, Modesto
Publicado 2012

Connecting Proline and γ-Aminobutyric Acid in Stressed Plants through Non-Enzymatic Reactions

por Signorelli, Santiago, Dans, Pablo D., Coitiño, E. Laura, Borsani, Omar, Monza, Jorge
Publicado en PLoS One (2015)

How accurate are accurate force-fields for B-DNA?

por Dans, Pablo D., Ivani, Ivan, Hospital, Adam, Portella, Guillem, González, Carlos, Orozco, Modesto
Publicado en Nucleic Acids Res (2017)

Modulation of the helical properties of DNA: next-to-nearest neighbour effects and beyond

por Balaceanu, Alexandra, Buitrago, Diana, Walther, Jürgen, Hospital, Adam, Dans, Pablo D, Orozco, Modesto
Publicado en Nucleic Acids Res (2019)

A multi-modal coarse grained model of DNA flexibility mappable to the atomistic level

por Walther, Jürgen, Dans, Pablo D, Balaceanu, Alexandra, Hospital, Adam, Bayarri, Genís, Orozco, Modesto
Publicado en Nucleic Acids Res (2020)

Direct measurement of the dielectric polarization properties of DNA

por Cuervo, Ana, Dans, Pablo D., Carrascosa, José L., Orozco, Modesto, Gomila, Gabriel, Fumagalli, Laura
Publicado 2014

The structural impact of DNA mismatches

por Rossetti, Giulia, Dans, Pablo D., Gomez-Pinto, Irene, Ivani, Ivan, Gonzalez, Carlos, Orozco, Modesto
Publicado en Nucleic Acids Res (2015)

BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data

por Hospital, Adam, Andrio, Pau, Cugnasco, Cesare, Codo, Laia, Becerra, Yolanda, Dans, Pablo D., Battistini, Federica, Torres, Jordi, Goñi, Ramón, Orozco, Modesto, Gelpí, Josep Ll.
Publicado en Nucleic Acids Res (2016)

The static and dynamic structural heterogeneities of B-DNA: extending Calladine–Dickerson rules

por Dans, Pablo D, Balaceanu, Alexandra, Pasi, Marco, Patelli, Alessandro S, Petkevičiūtė, Daiva, Walther, Jürgen, Hospital, Adam, Bayarri, Genís, Lavery, Richard, Maddocks, John H, Orozco, Modesto
Publicado en Nucleic Acids Res (2019)

Saturation of recognition elements blocks evolution of new tRNA identities

por Saint-Léger, Adélaïde, Bello, Carla, Dans, Pablo D., Torres, Adrian Gabriel, Novoa, Eva Maria, Camacho, Noelia, Orozco, Modesto, Kondrashov, Fyodor A., Ribas de Pouplana, Lluís
Publicado en Sci Adv (2016)

Long-timescale dynamics of the Drew–Dickerson dodecamer

por Dans, Pablo D., Danilāne, Linda, Ivani, Ivan, Dršata, Tomáš, Lankaš, Filip, Hospital, Adam, Walther, Jürgen, Pujagut, Ricard Illa, Battistini, Federica, Gelpí, Josep Lluis, Lavery, Richard, Orozco, Modesto
Publicado en Nucleic Acids Res (2016)

Glyceraldehyde-3-phosphate dehydrogenase is a chaperone that allocates labile heme in cells

por Sweeny, Elizabeth A., Singh, Anuradha Bharara, Chakravarti, Ritu, Martinez-Guzman, Osiris, Saini, Arushi, Haque, Mohammad Mahfuzul, Garee, Greer, Dans, Pablo D., Hannibal, Luciana, Reddi, Amit R., Stuehr, Dennis J.
Publicado en J Biol Chem (2018)

Impact of DNA methylation on 3D genome structure

por Buitrago, Diana, Labrador, Mireia, Arcon, Juan Pablo, Lema, Rafael, Flores, Oscar, Esteve-Codina, Anna, Blanc, Julie, Villegas, Nuria, Bellido, David, Gut, Marta, Dans, Pablo D., Heath, Simon C., Gut, Ivo G., Brun Heath, Isabelle, Orozco, Modesto
Publicado en Nat Commun (2021)

μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA

por Pasi, Marco, Maddocks, John H., Beveridge, David, Bishop, Thomas C., Case, David A., Cheatham, Thomas, Dans, Pablo D., Jayaram, B., Lankas, Filip, Laughton, Charles, Mitchell, Jonathan, Osman, Roman, Orozco, Modesto, Pérez, Alberto, Petkevičiūtė, Daiva, Spackova, Nada, Sponer, Jiri, Zakrzewska, Krystyna, Lavery, Richard
Publicado en Nucleic Acids Res (2014)

PARMBSC1: A REFINED FORCE-FIELD FOR DNA SIMULATIONS

por Ivani, Ivan, Dans, Pablo D., Noy, Agnes, Pérez, Alberto, Faustino, Ignacio, Hospital, Adam, Walther, Jürgen, Andrio, Pau, Goñi, Ramon, Balaceanu, Alexandra, Portella, Guillem, Battistini, Federica, Gelpí, Josep Lluis, González, Carlos, Vendruscolo, Michele, Laughton, Charles A., Harris, Sarah A., Case, David A., Orozco, Modesto
Publicado en Nat Methods (2015)

Epigenetic loss of RNA-methyltransferase NSUN5 in glioma targets ribosomes to drive a stress adaptive translational program

por Janin, Maxime, Ortiz-Barahona, Vanessa, de Moura, Manuel Castro, Martínez-Cardús, Anna, Llinàs-Arias, Pere, Soler, Marta, Nachmani, Daphna, Pelletier, Joffrey, Schumann, Ulrike, Calleja-Cervantes, Maria E., Moran, Sebastian, Guil, Sonia, Bueno-Costa, Alberto, Piñeyro, David, Perez-Salvia, Montserrat, Rosselló-Tortella, Margalida, Piqué, Laia, Bech-Serra, Joan J., De La Torre, Carolina, Vidal, August, Martínez-Iniesta, María, Martín-Tejera, Juan F., Villanueva, Alberto, Arias, Alexandra, Cuartas, Isabel, Aransay, Ana M., La Madrid, Andres Morales, Carcaboso, Angel M., Santa-Maria, Vicente, Mora, Jaume, Fernandez, Agustin F., Fraga, Mario F., Aldecoa, Iban, Pedrosa, Leire, Graus, Francesc, Vidal, Noemi, Martínez-Soler, Fina, Tortosa, Avelina, Carrato, Cristina, Balañá, Carme, Boudreau, Matthew W., Hergenrother, Paul J., Kötter, Peter, Entian, Karl-Dieter, Hench, Jürgen, Frank, Stephan, Mansouri, Sheila, Zadeh, Gelareh, Dans, Pablo D., Orozco, Modesto, Thomas, George, Blanco, Sandra, Seoane, Joan, Preiss, Thomas, Pandolfi, Pier Paolo, Esteller, Manel
Publicado en Acta Neuropathol (2019)