An improved genome reference for the African cichlid, Metriaclima zebra

gan Conte, Matthew A., Kocher, Thomas D.
Cyhoeddwyd yn BMC Genomics (2015)

Circular DNA Intermediate in the Duplication of Nile Tilapia vasa Genes

gan Fujimura, Koji, Conte, Matthew A., Kocher, Thomas D.
Cyhoeddwyd 2011

Multiple trans QTL and one cis-regulatory deletion are associated with the differential expression of cone opsins in African cichlids

gan Nandamuri, Sri Pratima, Conte, Matthew A., Carleton, Karen L.
Cyhoeddwyd yn BMC Genomics (2018)

Genomic Characterization of a B Chromosome in Lake Malawi Cichlid Fishes

gan Clark, Frances E., Conte, Matthew A., Kocher, Thomas D.
Cyhoeddwyd yn Genes (Basel) (2018)

Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra

gan O’Quin, Claire T, Drilea, Alexi C, Conte, Matthew A, Kocher, Thomas D
Cyhoeddwyd 2013

Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration

gan Nyberg, Kevin G, Conte, Matthew A, Kostyun, Jamie L, Forde, Alison, Bely, Alexandra E
Cyhoeddwyd 2012

Structure and decay of a proto-Y region in Tilapia, Oreochromis niloticus

gan Gammerdinger, William J, Conte, Matthew A, Acquah, Enoch A, Roberts, Reade B, Kocher, Thomas D
Cyhoeddwyd yn BMC Genomics (2014)

Comparative analysis of a sex chromosome from the blackchin tilapia, Sarotherodon melanotheron

gan Gammerdinger, William J., Conte, Matthew A., Baroiller, Jean-François, D’Cotta, Helena, Kocher, Thomas D.
Cyhoeddwyd yn BMC Genomics (2016)

A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions

gan Conte, Matthew A., Gammerdinger, William J., Bartie, Kerry L., Penman, David J., Kocher, Thomas D.
Cyhoeddwyd yn BMC Genomics (2017)

Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysis

gan Tao, Wenjing, Chen, Jinlin, Tan, Dejie, Yang, Jing, Sun, Lina, Wei, Jing, Conte, Matthew A., Kocher, Thomas D., Wang, Deshou
Cyhoeddwyd yn BMC Genomics (2018)

Origin of a Giant Sex Chromosome

gan Conte, Matthew A, Clark, Frances E, Roberts, Reade B, Xu, Luohao, Tao, Wenjing, Zhou, Qi, Wang, Deshou, Kocher, Thomas D
Cyhoeddwyd yn Mol Biol Evol (2020)

Evolution of cichlid vision via trans-regulatory divergence

gan O’Quin, Kelly E, Schulte, Jane E, Patel, Zil, Kahn, Nadia, Naseer, Zan, Wang, Helena, Conte, Matthew A, Carleton, Karen L
Cyhoeddwyd 2012

Structure and Sequence of the Sex Determining Locus in Two Wild Populations of Nile Tilapia

gan Triay, Cécile, Conte, Matthew A., Baroiller, Jean-François, Bezault, Etienne, Clark, Frances E., Penman, David J., Kocher, Thomas D., D’Cotta, Helena
Cyhoeddwyd yn Genes (Basel) (2020)

Tbx2a Modulates Switching of RH2 and LWS Opsin Gene Expression

gan Sandkam, Benjamin A, Campello, Laura, O’Brien, Conor, Nandamuri, Sri Pratima, Gammerdinger, William J, Conte, Matthew A, Swaroop, Anand, Carleton, Karen L
Cyhoeddwyd yn Mol Biol Evol (2020)

Integrated analysis of miRNA and mRNA expression profiles in tilapia gonads at an early stage of sex differentiation

gan Tao, Wenjing, Sun, Lina, Shi, Hongjuan, Cheng, Yunying, Jiang, Dongneng, Fu, Beide, Conte, Matthew A., Gammerdinger, William J., Kocher, Thomas D., Wang, Deshou
Cyhoeddwyd yn BMC Genomics (2016)

Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes

gan Conte, Matthew A, Joshi, Rajesh, Moore, Emily C, Nandamuri, Sri Pratima, Gammerdinger, William J, Roberts, Reade B, Carleton, Karen L, Lien, Sigbjørn, Kocher, Thomas D
Cyhoeddwyd yn Gigascience (2019)

An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags

gan Lee, Bo-Young, Howe, Aimee E, Conte, Matthew A, D'Cotta, Helena, Pepey, Elodie, Baroiller, Jean-Francois, di Palma, Federica, Carleton, Karen L, Kocher, Thomas D
Cyhoeddwyd 2010

Behavior-dependent cis regulation reveals genes and pathways associated with bower building in cichlid fishes

gan York, Ryan A., Patil, Chinar, Abdilleh, Kawther, Johnson, Zachary V., Conte, Matthew A., Genner, Martin J., McGrath, Patrick T., Fraser, Hunter B., Fernald, Russell D., Streelman, J. Todd
Cyhoeddwyd yn Proc Natl Acad Sci U S A (2018)

Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses

gan Yourick, Miranda R, Sandkam, Benjamin A, Gammerdinger, William J, Escobar-Camacho, Daniel, Nandamuri, Sri Pratima, Clark, Frances E, Joyce, Brendan, Conte, Matthew A, Kocher, Thomas D, Carleton, Karen L
Cyhoeddwyd yn Mol Ecol Resour (2019)

Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus)

gan Soler, Lucile, Conte, Matthew A, Katagiri, Takayuki, Howe, Aimee E, Lee, Bo-Young, Amemiya, Chris, Stuart, Andrew, Dossat, Carole, Poulain, Julie, Johnson, Jeremy, Di Palma, Federica, Lindblad-Toh, Kerstin, Baroiller, Jean-Francois, D'Cotta, Helena, Ozouf-Costaz, Catherine, Kocher, Thomas D
Cyhoeddwyd 2010