An improved genome reference for the African cichlid, Metriaclima zebra

Por Conte, Matthew A., Kocher, Thomas D.
Publicado no BMC Genomics (2015)

Circular DNA Intermediate in the Duplication of Nile Tilapia vasa Genes

Por Fujimura, Koji, Conte, Matthew A., Kocher, Thomas D.
Publicado em 2011

Multiple trans QTL and one cis-regulatory deletion are associated with the differential expression of cone opsins in African cichlids

Por Nandamuri, Sri Pratima, Conte, Matthew A., Carleton, Karen L.
Publicado no BMC Genomics (2018)

Genomic Characterization of a B Chromosome in Lake Malawi Cichlid Fishes

Por Clark, Frances E., Conte, Matthew A., Kocher, Thomas D.
Publicado no Genes (Basel) (2018)

Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra

Por O’Quin, Claire T, Drilea, Alexi C, Conte, Matthew A, Kocher, Thomas D
Publicado em 2013

Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration

Por Nyberg, Kevin G, Conte, Matthew A, Kostyun, Jamie L, Forde, Alison, Bely, Alexandra E
Publicado em 2012

Structure and decay of a proto-Y region in Tilapia, Oreochromis niloticus

Por Gammerdinger, William J, Conte, Matthew A, Acquah, Enoch A, Roberts, Reade B, Kocher, Thomas D
Publicado no BMC Genomics (2014)

Comparative analysis of a sex chromosome from the blackchin tilapia, Sarotherodon melanotheron

Por Gammerdinger, William J., Conte, Matthew A., Baroiller, Jean-François, D’Cotta, Helena, Kocher, Thomas D.
Publicado no BMC Genomics (2016)

A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions

Por Conte, Matthew A., Gammerdinger, William J., Bartie, Kerry L., Penman, David J., Kocher, Thomas D.
Publicado no BMC Genomics (2017)

Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysis

Por Tao, Wenjing, Chen, Jinlin, Tan, Dejie, Yang, Jing, Sun, Lina, Wei, Jing, Conte, Matthew A., Kocher, Thomas D., Wang, Deshou
Publicado no BMC Genomics (2018)

Evolution of cichlid vision via trans-regulatory divergence

Por O’Quin, Kelly E, Schulte, Jane E, Patel, Zil, Kahn, Nadia, Naseer, Zan, Wang, Helena, Conte, Matthew A, Carleton, Karen L
Publicado em 2012

Structure and Sequence of the Sex Determining Locus in Two Wild Populations of Nile Tilapia

Por Triay, Cécile, Conte, Matthew A., Baroiller, Jean-François, Bezault, Etienne, Clark, Frances E., Penman, David J., Kocher, Thomas D., D’Cotta, Helena
Publicado no Genes (Basel) (2020)

Tbx2a Modulates Switching of RH2 and LWS Opsin Gene Expression

Por Sandkam, Benjamin A, Campello, Laura, O’Brien, Conor, Nandamuri, Sri Pratima, Gammerdinger, William J, Conte, Matthew A, Swaroop, Anand, Carleton, Karen L
Publicado no Mol Biol Evol (2020)

Integrated analysis of miRNA and mRNA expression profiles in tilapia gonads at an early stage of sex differentiation

Por Tao, Wenjing, Sun, Lina, Shi, Hongjuan, Cheng, Yunying, Jiang, Dongneng, Fu, Beide, Conte, Matthew A., Gammerdinger, William J., Kocher, Thomas D., Wang, Deshou
Publicado no BMC Genomics (2016)

Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes

Por Conte, Matthew A, Joshi, Rajesh, Moore, Emily C, Nandamuri, Sri Pratima, Gammerdinger, William J, Roberts, Reade B, Carleton, Karen L, Lien, Sigbjørn, Kocher, Thomas D
Publicado no Gigascience (2019)

An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags

Por Lee, Bo-Young, Howe, Aimee E, Conte, Matthew A, D'Cotta, Helena, Pepey, Elodie, Baroiller, Jean-Francois, di Palma, Federica, Carleton, Karen L, Kocher, Thomas D
Publicado em 2010

Behavior-dependent cis regulation reveals genes and pathways associated with bower building in cichlid fishes

Por York, Ryan A., Patil, Chinar, Abdilleh, Kawther, Johnson, Zachary V., Conte, Matthew A., Genner, Martin J., McGrath, Patrick T., Fraser, Hunter B., Fernald, Russell D., Streelman, J. Todd
Publicado no Proc Natl Acad Sci U S A (2018)

Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses

Por Yourick, Miranda R, Sandkam, Benjamin A, Gammerdinger, William J, Escobar-Camacho, Daniel, Nandamuri, Sri Pratima, Clark, Frances E, Joyce, Brendan, Conte, Matthew A, Kocher, Thomas D, Carleton, Karen L
Publicado no Mol Ecol Resour (2019)

Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus)

Por Soler, Lucile, Conte, Matthew A, Katagiri, Takayuki, Howe, Aimee E, Lee, Bo-Young, Amemiya, Chris, Stuart, Andrew, Dossat, Carole, Poulain, Julie, Johnson, Jeremy, Di Palma, Federica, Lindblad-Toh, Kerstin, Baroiller, Jean-Francois, D'Cotta, Helena, Ozouf-Costaz, Catherine, Kocher, Thomas D
Publicado em 2010

A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs

Por Guyon, Richard, Rakotomanga, Michaelle, Azzouzi, Naoual, Coutanceau, Jean Pierre, Bonillo, Celine, D’Cotta, Helena, Pepey, Elodie, Soler, Lucile, Rodier-Goud, Marguerite, D’Hont, Angelique, Conte, Matthew A, van Bers, Nikkie EM, Penman, David J, Hitte, Christophe, Crooijmans, Richard PMA, Kocher, Thomas D, Ozouf-Costaz, Catherine, Baroiller, Jean Francois, Galibert, Francis
Publicado em 2012