An improved genome reference for the African cichlid, Metriaclima zebra

per Conte, Matthew A., Kocher, Thomas D.
Publicat a BMC Genomics (2015)

Circular DNA Intermediate in the Duplication of Nile Tilapia vasa Genes

per Fujimura, Koji, Conte, Matthew A., Kocher, Thomas D.
Publicat 2011

Multiple trans QTL and one cis-regulatory deletion are associated with the differential expression of cone opsins in African cichlids

per Nandamuri, Sri Pratima, Conte, Matthew A., Carleton, Karen L.
Publicat a BMC Genomics (2018)

Genomic Characterization of a B Chromosome in Lake Malawi Cichlid Fishes

per Clark, Frances E., Conte, Matthew A., Kocher, Thomas D.
Publicat a Genes (Basel) (2018)

Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra

per O’Quin, Claire T, Drilea, Alexi C, Conte, Matthew A, Kocher, Thomas D
Publicat 2013

Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration

per Nyberg, Kevin G, Conte, Matthew A, Kostyun, Jamie L, Forde, Alison, Bely, Alexandra E
Publicat 2012

Structure and decay of a proto-Y region in Tilapia, Oreochromis niloticus

per Gammerdinger, William J, Conte, Matthew A, Acquah, Enoch A, Roberts, Reade B, Kocher, Thomas D
Publicat a BMC Genomics (2014)

Comparative analysis of a sex chromosome from the blackchin tilapia, Sarotherodon melanotheron

per Gammerdinger, William J., Conte, Matthew A., Baroiller, Jean-François, D’Cotta, Helena, Kocher, Thomas D.
Publicat a BMC Genomics (2016)

A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions

per Conte, Matthew A., Gammerdinger, William J., Bartie, Kerry L., Penman, David J., Kocher, Thomas D.
Publicat a BMC Genomics (2017)

Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysis

per Tao, Wenjing, Chen, Jinlin, Tan, Dejie, Yang, Jing, Sun, Lina, Wei, Jing, Conte, Matthew A., Kocher, Thomas D., Wang, Deshou
Publicat a BMC Genomics (2018)

Origin of a Giant Sex Chromosome

per Conte, Matthew A, Clark, Frances E, Roberts, Reade B, Xu, Luohao, Tao, Wenjing, Zhou, Qi, Wang, Deshou, Kocher, Thomas D
Publicat a Mol Biol Evol (2020)

Evolution of cichlid vision via trans-regulatory divergence

per O’Quin, Kelly E, Schulte, Jane E, Patel, Zil, Kahn, Nadia, Naseer, Zan, Wang, Helena, Conte, Matthew A, Carleton, Karen L
Publicat 2012

Structure and Sequence of the Sex Determining Locus in Two Wild Populations of Nile Tilapia

per Triay, Cécile, Conte, Matthew A., Baroiller, Jean-François, Bezault, Etienne, Clark, Frances E., Penman, David J., Kocher, Thomas D., D’Cotta, Helena
Publicat a Genes (Basel) (2020)

Tbx2a Modulates Switching of RH2 and LWS Opsin Gene Expression

per Sandkam, Benjamin A, Campello, Laura, O’Brien, Conor, Nandamuri, Sri Pratima, Gammerdinger, William J, Conte, Matthew A, Swaroop, Anand, Carleton, Karen L
Publicat a Mol Biol Evol (2020)

Integrated analysis of miRNA and mRNA expression profiles in tilapia gonads at an early stage of sex differentiation

per Tao, Wenjing, Sun, Lina, Shi, Hongjuan, Cheng, Yunying, Jiang, Dongneng, Fu, Beide, Conte, Matthew A., Gammerdinger, William J., Kocher, Thomas D., Wang, Deshou
Publicat a BMC Genomics (2016)

Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes

per Conte, Matthew A, Joshi, Rajesh, Moore, Emily C, Nandamuri, Sri Pratima, Gammerdinger, William J, Roberts, Reade B, Carleton, Karen L, Lien, Sigbjørn, Kocher, Thomas D
Publicat a Gigascience (2019)

An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags

per Lee, Bo-Young, Howe, Aimee E, Conte, Matthew A, D'Cotta, Helena, Pepey, Elodie, Baroiller, Jean-Francois, di Palma, Federica, Carleton, Karen L, Kocher, Thomas D
Publicat 2010

Behavior-dependent cis regulation reveals genes and pathways associated with bower building in cichlid fishes

per York, Ryan A., Patil, Chinar, Abdilleh, Kawther, Johnson, Zachary V., Conte, Matthew A., Genner, Martin J., McGrath, Patrick T., Fraser, Hunter B., Fernald, Russell D., Streelman, J. Todd
Publicat a Proc Natl Acad Sci U S A (2018)

Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses

per Yourick, Miranda R, Sandkam, Benjamin A, Gammerdinger, William J, Escobar-Camacho, Daniel, Nandamuri, Sri Pratima, Clark, Frances E, Joyce, Brendan, Conte, Matthew A, Kocher, Thomas D, Carleton, Karen L
Publicat a Mol Ecol Resour (2019)

Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus)

per Soler, Lucile, Conte, Matthew A, Katagiri, Takayuki, Howe, Aimee E, Lee, Bo-Young, Amemiya, Chris, Stuart, Andrew, Dossat, Carole, Poulain, Julie, Johnson, Jeremy, Di Palma, Federica, Lindblad-Toh, Kerstin, Baroiller, Jean-Francois, D'Cotta, Helena, Ozouf-Costaz, Catherine, Kocher, Thomas D
Publicat 2010