Local Persistence of Novel MRSA Lineage after Hospital Ward Outbreak, Cambridge, UK, 2011–2013

por Toleman, Michelle S., Reuter, Sandra, Coll, Francesc, Harrison, Ewan M., Peacock, Sharon J.
Publicado en Emerg Infect Dis (2016)

Feasibility of informing syndrome-level empiric antibiotic recommendations using publicly available antibiotic resistance datasets

por Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.
Publicado en Wellcome Open Res (2020)

Imputation-Based Population Genetics Analysis of Plasmodium falciparum Malaria Parasites

por Samad, Hanif, Coll, Francesc, Preston, Mark D., Ocholla, Harold, Fairhurst, Rick M., Clark, Taane G.
Publicado en PLoS Genet (2015)

Ferric Citrate Regulator FecR Is Translocated across the Bacterial Inner Membrane via a Unique Twin-Arginine Transport-Dependent Mechanism

por Passmore, Ian J., Dow, Jennifer M., Coll, Francesc, Cuccui, Jon, Palmer, Tracy, Wren, Brendan W.
Publicado en J Bacteriol (2020)

Genomic Surveillance of Methicillin-resistant Staphylococcus aureus: A Mathematical Early Modeling Study of Cost-effectiveness

por Dymond, Amy, Davies, Heather, Mealing, Stuart, Pollit, Vicki, Coll, Francesc, Brown, Nicholas M, Peacock, Sharon J
Publicado en Clin Infect Dis (2020)

rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree

por Wailan, Alexander M., Coll, Francesc, Heinz, Eva, Tonkin-Hill, Gerry, Corander, Jukka, Feasey, Nicholas A., Thomson, Nicholas R.
Publicado en Microb Genom (2019)

Defining metrics for whole-genome sequence analysis of MRSA in clinical practice

por Raven, Kathy E., Blane, Beth, Kumar, Narender, Leek, Danielle, Bragin, Eugene, Coll, Francesc, Parkhill, Julian, Peacock, Sharon J.
Publicado en Microb Genom (2020)

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences

por Coll, Francesc, Mallard, Kim, Preston, Mark D., Bentley, Stephen, Parkhill, Julian, McNerney, Ruth, Martin, Nigel, Clark, Taane G.
Publicado 2012

Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England

por Harrison, Ewan M., Coll, Francesc, Toleman, Michelle S., Blane, Beth, Brown, Nicholas M., Török, M. Estee, Parkhill, Julian, Peacock, Sharon J.
Publicado en Sci Rep (2017)

Systematic Surveillance Detects Multiple Silent Introductions and Household Transmission of Methicillin-Resistant Staphylococcus aureus USA300 in the East of England

por Toleman, Michelle S., Reuter, Sandra, Coll, Francesc, Harrison, Ewan M., Blane, Beth, Brown, Nicholas M., Török, M. Estée, Parkhill, Julian, Peacock, Sharon J.
Publicado en J Infect Dis (2016)

Transient Silencing of Antibiotic Resistance by Mutation Represents a Significant Potential Source of Unanticipated Therapeutic Failure

por Kime, Louise, Randall, Christopher P., Banda, Frank I., Coll, Francesc, Wright, John, Richardson, Joseph, Empel, Joanna, Parkhill, Julian, O’Neill, Alex J.
Publicado en mBio (2019)

Whole Genome Sequencing Based Characterization of Extensively Drug-Resistant Mycobacterium tuberculosis Isolates from Pakistan

por Ali, Asho, Hasan, Zahra, McNerney, Ruth, Mallard, Kim, Hill-Cawthorne, Grant, Coll, Francesc, Nair, Mridul, Pain, Arnab, Clark, Taane G., Hasan, Rumina
Publicado en PLoS One (2015)

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis

por Benavente, Ernest D, Coll, Francesc, Furnham, Nick, McNerney, Ruth, Glynn, Judith R, Campino, Susana, Pain, Arnab, Mohareb, Fady R, Clark, Taane G
Publicado en BMC Bioinformatics (2015)

Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing

por Raven, Kathy E., Gouliouris, Theodore, Brodrick, Hayley, Coll, Francesc, Brown, Nicholas M., Reynolds, Rosy, Reuter, Sandra, Török, M. Estée, Parkhill, Julian, Peacock, Sharon J.
Publicado en Clin Infect Dis (2017)

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains

por Coll, Francesc, McNerney, Ruth, Guerra-Assunção, José Afonso, Glynn, Judith R., Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Pain, Arnab, Martin, Nigel, Clark, Taane G.
Publicado 2014

Assessing the sustainability of contrasting land use scenarios through the Socioecological Integrated Analysis (SIA) of the metropolitan green infrastructure in Barcelona

por Padró, Roc, La Rota-Aguilera, María José, Giocoli, Annalisa, Cirera, Jacob, Coll, Francesc, Pons, Manel, Pino, Joan, Pili, Silvia, Serrano, Tarik, Villalba, Gara, Marull, Joan
Publicado en Landsc Urban Plan (2020)

Investigation of a Cluster of Sequence Type 22 Methicillin-Resistant Staphylococcus aureus Transmission in a Community Setting

por Toleman, Michelle S, Watkins, Emmeline R, Williams, Tom, Blane, Beth, Sadler, Belinda, Harrison, Ewan M, Coll, Francesc, Parkhill, Julian, Nazareth, Bernadette, Brown, Nicholas M, Peacock, Sharon J
Publicado en Clin Infect Dis (2017)

Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis

por Coll, Francesc, Raven, Kathy E, Knight, Gwenan M, Blane, Beth, Harrison, Ewan M, Leek, Danielle, Enoch, David A, Brown, Nicholas M, Parkhill, Julian, Peacock, Sharon J
Publicado en Lancet Microbe (2020)

Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events

por Jamrozy, Dorota, Coll, Francesc, Mather, Alison E., Harris, Simon R., Harrison, Ewan M., MacGowan, Alasdair, Karas, Andreas, Elston, Tony, Estée Török, M., Parkhill, Julian, Peacock, Sharon J.
Publicado en BMC Genomics (2017)

Prospective genomic surveillance of methicillin-resistant Staphylococcus aureus (MRSA) associated with bloodstream infection, England, 1 October 2012 to 30 September 2013

por Toleman, Michelle S, Reuter, Sandra, Jamrozy, Dorota, Wilson, Hayley J, Blane, Beth, Harrison, Ewan M, Coll, Francesc, Hope, Russell J, Kearns, Angela, Parkhill, Julian, Peacock, Sharon J, Török, M Estée
Publicado en Euro Surveill (2019)