Local Persistence of Novel MRSA Lineage after Hospital Ward Outbreak, Cambridge, UK, 2011–2013

gan Toleman, Michelle S., Reuter, Sandra, Coll, Francesc, Harrison, Ewan M., Peacock, Sharon J.
Cyhoeddwyd yn Emerg Infect Dis (2016)

Feasibility of informing syndrome-level empiric antibiotic recommendations using publicly available antibiotic resistance datasets

gan Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.
Cyhoeddwyd yn Wellcome Open Res (2020)

Imputation-Based Population Genetics Analysis of Plasmodium falciparum Malaria Parasites

gan Samad, Hanif, Coll, Francesc, Preston, Mark D., Ocholla, Harold, Fairhurst, Rick M., Clark, Taane G.
Cyhoeddwyd yn PLoS Genet (2015)

Ferric Citrate Regulator FecR Is Translocated across the Bacterial Inner Membrane via a Unique Twin-Arginine Transport-Dependent Mechanism

gan Passmore, Ian J., Dow, Jennifer M., Coll, Francesc, Cuccui, Jon, Palmer, Tracy, Wren, Brendan W.
Cyhoeddwyd yn J Bacteriol (2020)

Genomic Surveillance of Methicillin-resistant Staphylococcus aureus: A Mathematical Early Modeling Study of Cost-effectiveness

gan Dymond, Amy, Davies, Heather, Mealing, Stuart, Pollit, Vicki, Coll, Francesc, Brown, Nicholas M, Peacock, Sharon J
Cyhoeddwyd yn Clin Infect Dis (2020)

rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree

gan Wailan, Alexander M., Coll, Francesc, Heinz, Eva, Tonkin-Hill, Gerry, Corander, Jukka, Feasey, Nicholas A., Thomson, Nicholas R.
Cyhoeddwyd yn Microb Genom (2019)

Defining metrics for whole-genome sequence analysis of MRSA in clinical practice

gan Raven, Kathy E., Blane, Beth, Kumar, Narender, Leek, Danielle, Bragin, Eugene, Coll, Francesc, Parkhill, Julian, Peacock, Sharon J.
Cyhoeddwyd yn Microb Genom (2020)

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences

gan Coll, Francesc, Mallard, Kim, Preston, Mark D., Bentley, Stephen, Parkhill, Julian, McNerney, Ruth, Martin, Nigel, Clark, Taane G.
Cyhoeddwyd 2012

Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England

gan Harrison, Ewan M., Coll, Francesc, Toleman, Michelle S., Blane, Beth, Brown, Nicholas M., Török, M. Estee, Parkhill, Julian, Peacock, Sharon J.
Cyhoeddwyd yn Sci Rep (2017)

Systematic Surveillance Detects Multiple Silent Introductions and Household Transmission of Methicillin-Resistant Staphylococcus aureus USA300 in the East of England

gan Toleman, Michelle S., Reuter, Sandra, Coll, Francesc, Harrison, Ewan M., Blane, Beth, Brown, Nicholas M., Török, M. Estée, Parkhill, Julian, Peacock, Sharon J.
Cyhoeddwyd yn J Infect Dis (2016)

Transient Silencing of Antibiotic Resistance by Mutation Represents a Significant Potential Source of Unanticipated Therapeutic Failure

gan Kime, Louise, Randall, Christopher P., Banda, Frank I., Coll, Francesc, Wright, John, Richardson, Joseph, Empel, Joanna, Parkhill, Julian, O’Neill, Alex J.
Cyhoeddwyd yn mBio (2019)

Whole Genome Sequencing Based Characterization of Extensively Drug-Resistant Mycobacterium tuberculosis Isolates from Pakistan

gan Ali, Asho, Hasan, Zahra, McNerney, Ruth, Mallard, Kim, Hill-Cawthorne, Grant, Coll, Francesc, Nair, Mridul, Pain, Arnab, Clark, Taane G., Hasan, Rumina
Cyhoeddwyd yn PLoS One (2015)

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis

gan Benavente, Ernest D, Coll, Francesc, Furnham, Nick, McNerney, Ruth, Glynn, Judith R, Campino, Susana, Pain, Arnab, Mohareb, Fady R, Clark, Taane G
Cyhoeddwyd yn BMC Bioinformatics (2015)

Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing

gan Raven, Kathy E., Gouliouris, Theodore, Brodrick, Hayley, Coll, Francesc, Brown, Nicholas M., Reynolds, Rosy, Reuter, Sandra, Török, M. Estée, Parkhill, Julian, Peacock, Sharon J.
Cyhoeddwyd yn Clin Infect Dis (2017)

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains

gan Coll, Francesc, McNerney, Ruth, Guerra-Assunção, José Afonso, Glynn, Judith R., Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Pain, Arnab, Martin, Nigel, Clark, Taane G.
Cyhoeddwyd 2014

Assessing the sustainability of contrasting land use scenarios through the Socioecological Integrated Analysis (SIA) of the metropolitan green infrastructure in Barcelona

gan Padró, Roc, La Rota-Aguilera, María José, Giocoli, Annalisa, Cirera, Jacob, Coll, Francesc, Pons, Manel, Pino, Joan, Pili, Silvia, Serrano, Tarik, Villalba, Gara, Marull, Joan
Cyhoeddwyd yn Landsc Urban Plan (2020)

Investigation of a Cluster of Sequence Type 22 Methicillin-Resistant Staphylococcus aureus Transmission in a Community Setting

gan Toleman, Michelle S, Watkins, Emmeline R, Williams, Tom, Blane, Beth, Sadler, Belinda, Harrison, Ewan M, Coll, Francesc, Parkhill, Julian, Nazareth, Bernadette, Brown, Nicholas M, Peacock, Sharon J
Cyhoeddwyd yn Clin Infect Dis (2017)

Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis

gan Coll, Francesc, Raven, Kathy E, Knight, Gwenan M, Blane, Beth, Harrison, Ewan M, Leek, Danielle, Enoch, David A, Brown, Nicholas M, Parkhill, Julian, Peacock, Sharon J
Cyhoeddwyd yn Lancet Microbe (2020)

Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events

gan Jamrozy, Dorota, Coll, Francesc, Mather, Alison E., Harris, Simon R., Harrison, Ewan M., MacGowan, Alasdair, Karas, Andreas, Elston, Tony, Estée Török, M., Parkhill, Julian, Peacock, Sharon J.
Cyhoeddwyd yn BMC Genomics (2017)

Prospective genomic surveillance of methicillin-resistant Staphylococcus aureus (MRSA) associated with bloodstream infection, England, 1 October 2012 to 30 September 2013

gan Toleman, Michelle S, Reuter, Sandra, Jamrozy, Dorota, Wilson, Hayley J, Blane, Beth, Harrison, Ewan M, Coll, Francesc, Hope, Russell J, Kearns, Angela, Parkhill, Julian, Peacock, Sharon J, Török, M Estée
Cyhoeddwyd yn Euro Surveill (2019)