Modification Site Localization Scoring: Strategies and Performance

Por Chalkley, Robert J., Clauser, Karl R.
Publicado em 2012

Shotgun Protein Sequencing with Meta-contig Assembly

Por Guthals, Adrian, Clauser, Karl R., Bandeira, Nuno
Publicado em 2012

Enrichment of Extracellular Matrix Proteins from Tissues and Digestion into Peptides for Mass Spectrometry Analysis

Por Naba, Alexandra, Clauser, Karl R., Hynes, Richard O.
Publicado no J Vis Exp (2015)

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins

Por Calvo, Sarah E., Clauser, Karl R., Mootha, Vamsi K.
Publicado no Nucleic Acids Res (2016)

Optimizing Performance of Glycopeptide Capture for Plasma Proteomics

Por Berven, Frode S., Ahmad, Rushdy, Clauser, Karl R., Carr, Steven A.
Publicado em 2010

Sequencing-Grade De novo Analysis of MS/MS Triplets (CID/HCD/ETD) From Overlapping Peptides

Por Guthals, Adrian, Clauser, Karl R., Frank, Ari M., Bandeira, Nuno
Publicado no J Proteome Res (2013)

A Face in the Crowd: Recognizing Peptides Through Database Search

Por Eng, Jimmy K., Searle, Brian C., Clauser, Karl R., Tabb, David L.
Publicado em 2011

Extracellular matrix signatures of human mammary carcinoma identify novel metastasis promoters

Por Naba, Alexandra, Clauser, Karl R, Lamar, John M, Carr, Steven A, Hynes, Richard O
Publicado em 2014

Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression

Por Naba, Alexandra, Clauser, Karl R., Mani, D. R., Carr, Steven A., Hynes, Richard O.
Publicado no Sci Rep (2017)

The Matrisome: In Silico Definition and In Vivo Characterization by Proteomics of Normal and Tumor Extracellular Matrices

Por Naba, Alexandra, Clauser, Karl R., Hoersch, Sebastian, Liu, Hui, Carr, Steven A., Hynes, Richard O.
Publicado em 2012

The Extracellular Matrix: Tools and Insights for the “Omics” Era

Por Naba, Alexandra, Clauser, Karl R., Ding, Huiming, Whittaker, Charles A., Carr, Steven A., Hynes, Richard O.
Publicado no Matrix Biol (2015)

Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver

Por Naba, Alexandra, Clauser, Karl R, Whittaker, Charles A, Carr, Steven A, Tanabe, Kenneth K, Hynes, Richard O
Publicado no BMC Cancer (2014)

Comparative Analysis of Mitochondrial N-Termini from Mouse, Human, and Yeast

Por Calvo, Sarah E., Julien, Olivier, Clauser, Karl R., Shen, Hongying, Kamer, Kimberli J., Wells, James A., Mootha, Vamsi K.
Publicado no Mol Cell Proteomics (2017)

Clawing through Evolution: Toxin Diversification and Convergence in the Ancient Lineage Chilopoda (Centipedes)

Por Undheim, Eivind A.B., Jones, Alun, Clauser, Karl R., Holland, John W., Pineda, Sandy S., King, Glenn F., Fry, Bryan G.
Publicado em 2014

iTRAQ Labeling is Superior to mTRAQ for Quantitative Global Proteomics and Phosphoproteomics

Por Mertins, Philipp, Udeshi, Namrata D., Clauser, Karl R., Mani, DR, Patel, Jinal, Ong, Shao-en, Jaffe, Jacob D., Carr, Steven A.
Publicado em 2012

Methods for Quantification of in vivo Changes in Protein Ubiquitination following Proteasome and Deubiquitinase Inhibition

Por Udeshi, Namrata D., Mani, D. R., Eisenhaure, Thomas, Mertins, Philipp, Jaffe, Jacob D., Clauser, Karl R., Hacohen, Nir, Carr, Steven A.
Publicado em 2012

Methods, Tools and Current Perspectives in Proteogenomics

Por Ruggles, Kelly V., Krug, Karsten, Wang, Xiaojing, Clauser, Karl R., Wang, Jing, Payne, Samuel H., Fenyö, David, Zhang, Bing, Mani, D. R.
Publicado no Mol Cell Proteomics (2017)

Site-specific identification and quantitation of endogenous SUMO modifications under native conditions

Por Lumpkin, Ryan J., Gu, Hongbo, Zhu, Yiying, Leonard, Marilyn, Ahmad, Alla S., Clauser, Karl R., Meyer, Jesse G., Bennett, Eric J., Komives, Elizabeth A.
Publicado no Nat Commun (2017)

Proteomic screen defines the Polo-box domain interactome and identifies Rock2 as a Plk1 substrate

Por Lowery, Drew M, Clauser, Karl R, Hjerrild, Majbrit, Lim, Dan, Alexander, Jes, Kishi, Kazuhiro, Ong, Shao-En, Gammeltoft, Steen, Carr, Steven A, Yaffe, Michael B
Publicado em 2007

A Breast Cancer Stem Cell Niche Supported by Juxtacrine Signaling from Monocytes and Macrophages

Por Lu, Haihui, Clauser, Karl R., Tam, Wai Leong, Fröse, Julia, Ye, Xin, Eaton, Elinor Ng, Reinhardt, Ferenc, Donnenberg, Vera S., Bhargava, Rohit, Carr, Steven A., Weinberg, Robert A.
Publicado no Nat Cell Biol (2014)