The effects of multiple features of alternatively spliced exons on the K(A)/K(S )ratio test

Bằng Chen, Feng-Chi, Chuang, Trees-Juen
Được phát hành 2006

Different alternative splicing patterns are subject to opposite selection pressure for protein reading frame preservation

Bằng Chen, Feng-Chi, Chuang, Trees-Juen
Được phát hành 2007

DNA Methylation is Associated with an Increased Level of Conservation at Nondegenerate Nucleotides in Mammals

Bằng Chuang, Trees-Juen, Chen, Feng-Chi
Được phát hành 2014

Impacts of Pretranscriptional DNA Methylation, Transcriptional Transcription Factor, and Posttranscriptional microRNA Regulations on Protein Evolutionary Rate

Bằng Chuang, Trees-Juen, Chiang, Tai-Wei
Được phát hành 2014

NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors

Bằng Chen, Chia-Ying, Chuang, Trees-Juen
Xuất bản năm BMC Bioinformatics (2019)

Comment on "A comprehensive overview and evaluation of circular RNA detection tools"

Bằng Chen, Chia-Ying, Chuang, Trees-Juen
Xuất bản năm PLoS Comput Biol (2019)

A-to-I RNA editing contributes to the persistence of predicted damaging mutations in populations

Bằng Mai, Te-Lun, Chuang, Trees-Juen
Xuất bản năm Genome Res (2019)

Biogenesis, identification, and function of exonic circular RNAs

Bằng Chen, Iju, Chen, Chia‐Ying, Chuang, Trees‐Juen
Xuất bản năm Wiley Interdiscip Rev RNA (2015)

INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events

Bằng Chen, Feng-Chi, Chen, Chueng-Jong, Chuang, Trees-Juen
Được phát hành 2007

CNVVdb: a database of copy number variations across vertebrate genomes

Bằng Chen, Feng-Chi, Chen, Yen-Zho, Chuang, Trees-Juen
Được phát hành 2009

Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons

Bằng Chuang, Trees-Juen, Chen, Feng-Chi, Chen, Yen-Zho
Được phát hành 2012

A Novel Framework for the Identification and Analysis of Duplicons between Human and Chimpanzee

Bằng Chuang, Trees-Juen, Wu, Shian-Zu, Huang, Yao-Ting
Được phát hành 2013

The Relationships Among MicroRNA Regulation, Intrinsically Disordered Regions, and Other Indicators of Protein Evolutionary Rate

Bằng Chen, Sean Chun-Chang, Chuang, Trees-Juen, Li, Wen-Hsiung
Được phát hành 2011

Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat

Bằng Chen, Feng-Chi, Chen, Chuang-Jong, Ho, Jar-Yi, Chuang, Trees-Juen
Được phát hành 2006

Human-specific insertions and deletions inferred from mammalian genome sequences

Bằng Chen, Feng-Chi, Chen, Chueng-Jong, Li, Wen-Hsiung, Chuang, Trees-Juen
Được phát hành 2007

Scanning for the Signatures of Positive Selection for Human-Specific Insertions and Deletions

Bằng Chen, Chun-Hsi, Chuang, Trees-Juen, Liao, Ben-Yang, Chen, Feng-Chi
Được phát hành 2009

Gene Family Size Conservation Is a Good Indicator of Evolutionary Rates

Bằng Chen, Feng-Chi, Chen, Chiuan-Jung, Li, Wen-Hsiung, Chuang, Trees-Juen
Được phát hành 2010

The evolution of the coding exome of the Arabidopsis species - the influences of DNA methylation, relative exon position, and exon length

Bằng Chen, Feng-Chi, Chuang, Trees-Juen, Lin, Hsuan-Yu, Hsu, Min-Kung
Được phát hành 2014

Purifying selection shapes the coincident SNP distribution of primate coding sequences

Bằng Chen, Chia-Ying, Hung, Li-Yuan, Wu, Chan-Shuo, Chuang, Trees-Juen
Xuất bản năm Sci Rep (2016)

Assessment of imprinting- and genetic variation-dependent monoallelic expression using reciprocal allele descendants between human family trios

Bằng Chuang, Trees-Juen, Tseng, Yu-Hsiang, Chen, Chia-Ying, Wang, Yi-Da
Xuất bản năm Sci Rep (2017)