The effects of multiple features of alternatively spliced exons on the K(A)/K(S )ratio test

by Chen, Feng-Chi, Chuang, Trees-Juen
Published 2006

Different alternative splicing patterns are subject to opposite selection pressure for protein reading frame preservation

by Chen, Feng-Chi, Chuang, Trees-Juen
Published 2007

DNA Methylation is Associated with an Increased Level of Conservation at Nondegenerate Nucleotides in Mammals

by Chuang, Trees-Juen, Chen, Feng-Chi
Published 2014

Impacts of Pretranscriptional DNA Methylation, Transcriptional Transcription Factor, and Posttranscriptional microRNA Regulations on Protein Evolutionary Rate

by Chuang, Trees-Juen, Chiang, Tai-Wei
Published 2014

NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors

by Chen, Chia-Ying, Chuang, Trees-Juen
Published in BMC Bioinformatics (2019)

Comment on "A comprehensive overview and evaluation of circular RNA detection tools"

by Chen, Chia-Ying, Chuang, Trees-Juen
Published in PLoS Comput Biol (2019)

A-to-I RNA editing contributes to the persistence of predicted damaging mutations in populations

by Mai, Te-Lun, Chuang, Trees-Juen
Published in Genome Res (2019)

Biogenesis, identification, and function of exonic circular RNAs

by Chen, Iju, Chen, Chia‐Ying, Chuang, Trees‐Juen
Published in Wiley Interdiscip Rev RNA (2015)

INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events

by Chen, Feng-Chi, Chen, Chueng-Jong, Chuang, Trees-Juen
Published 2007

CNVVdb: a database of copy number variations across vertebrate genomes

by Chen, Feng-Chi, Chen, Yen-Zho, Chuang, Trees-Juen
Published 2009

Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons

by Chuang, Trees-Juen, Chen, Feng-Chi, Chen, Yen-Zho
Published 2012

A Novel Framework for the Identification and Analysis of Duplicons between Human and Chimpanzee

by Chuang, Trees-Juen, Wu, Shian-Zu, Huang, Yao-Ting
Published 2013

The Relationships Among MicroRNA Regulation, Intrinsically Disordered Regions, and Other Indicators of Protein Evolutionary Rate

by Chen, Sean Chun-Chang, Chuang, Trees-Juen, Li, Wen-Hsiung
Published 2011

Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat

by Chen, Feng-Chi, Chen, Chuang-Jong, Ho, Jar-Yi, Chuang, Trees-Juen
Published 2006

Human-specific insertions and deletions inferred from mammalian genome sequences

by Chen, Feng-Chi, Chen, Chueng-Jong, Li, Wen-Hsiung, Chuang, Trees-Juen
Published 2007

Scanning for the Signatures of Positive Selection for Human-Specific Insertions and Deletions

by Chen, Chun-Hsi, Chuang, Trees-Juen, Liao, Ben-Yang, Chen, Feng-Chi
Published 2009

Gene Family Size Conservation Is a Good Indicator of Evolutionary Rates

by Chen, Feng-Chi, Chen, Chiuan-Jung, Li, Wen-Hsiung, Chuang, Trees-Juen
Published 2010

The evolution of the coding exome of the Arabidopsis species - the influences of DNA methylation, relative exon position, and exon length

by Chen, Feng-Chi, Chuang, Trees-Juen, Lin, Hsuan-Yu, Hsu, Min-Kung
Published 2014

Purifying selection shapes the coincident SNP distribution of primate coding sequences

by Chen, Chia-Ying, Hung, Li-Yuan, Wu, Chan-Shuo, Chuang, Trees-Juen
Published in Sci Rep (2016)

Assessment of imprinting- and genetic variation-dependent monoallelic expression using reciprocal allele descendants between human family trios

by Chuang, Trees-Juen, Tseng, Yu-Hsiang, Chen, Chia-Ying, Wang, Yi-Da
Published in Sci Rep (2017)