Targeted Feature Detection for Data-Dependent Shotgun Proteomics

Por Weisser, Hendrik, Choudhary, Jyoti S.
Publicado no J Proteome Res (2017)

DecoyPyrat: Fast Non-redundant Hybrid Decoy Sequence Generation for Large Scale Proteomics

Por Wright, James C, Choudhary, Jyoti S
Publicado no J Proteomics Bioinform (2016)

Global, site-specific analysis of neuronal protein S-acylation

Por Collins, Mark O., Woodley, Keith T., Choudhary, Jyoti S.
Publicado no Sci Rep (2017)

Comparison of Mascot and X!Tandem Performance for Low and High Accuracy Mass Spectrometry and the Development of an Adjusted Mascot Threshold

Por Brosch, Markus, Swamy, Sajani, Hubbard, Tim, Choudhary, Jyoti
Publicado em 2008

Accurate and Sensitive Peptide Identification with Mascot Percolator

Por Brosch, Markus, Yu, Lu, Hubbard, Tim, Choudhary, Jyoti
Publicado em 2009

Resolving Affinity Purified Protein Complexes by Blue Native PAGE and Protein Correlation Profiling

Por Pardo, Mercedes, Bode, Daniel, Yu, Lu, Choudhary, Jyoti S.
Publicado no J Vis Exp (2017)

Identification of protein complexes that bind to histone H3 combinatorial modifications using super-SILAC and weighted correlation network analysis

Por Kunowska, Natalia, Rotival, Maxime, Yu, Lu, Choudhary, Jyoti, Dillon, Niall
Publicado no Nucleic Acids Res (2015)

Characterization of Two Distinct Nucleosome Remodeling and Deacetylase (NuRD) Complex Assemblies in Embryonic Stem Cells

Por Bode, Daniel, Yu, Lu, Tate, Peri, Pardo, Mercedes, Choudhary, Jyoti
Publicado no Mol Cell Proteomics (2016)

A quantitative proteomic screen of the Campylobacter jejuni flagellar-dependent secretome

Por Scanlan, Eoin, Yu, Lu, Maskell, Duncan, Choudhary, Jyoti, Grant, Andrew
Publicado no J Proteomics (2017)

Fast, Quantitative and Variant Enabled Mapping of Peptides to Genomes

Por Schlaffner, Christoph N., Pirklbauer, Georg J., Bender, Andreas, Choudhary, Jyoti S.
Publicado no Cell Syst (2017)

A comprehensive survey of protein palmitoylation in late blood-stage Plasmodium falciparum

Por Jones, Matthew L, Collins, Mark O, Choudhary, Jyoti S, Rayner, Julian C
Publicado em 2010

A comprehensive survey of protein palmitoylation in late blood-stage Plasmodium falciparum

Por Jones, Matthew L, Collins, Mark O, Choudhary, Jyoti, Rayner, Julian C
Publicado em 2010

APC15 drives the turnover of MCC-Cdc20 to make the Spindle Assembly Checkpoint responsive to kinetochore attachment

Por Mansfeld, Jörg, Collin, Philippe, Collins, Mark O., Choudhary, Jyoti S., Pines, Jonathon
Publicado em 2011

Flexible Data Analysis Pipeline for High-Confidence Proteogenomics

Por Weisser, Hendrik, Wright, James C., Mudge, Jonathan M., Gutenbrunner, Petra, Choudhary, Jyoti S.
Publicado no J Proteome Res (2016)

Analysis of Protein Palmitoylation Reveals a Pervasive Role in Plasmodium Development and Pathogenesis

Por Jones, Matthew L., Collins, Mark O., Goulding, David, Choudhary, Jyoti S., Rayner, Julian C.
Publicado em 2012

Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation()

Por Collins, Mark O., Wright, James C., Jones, Matthew, Rayner, Julian C., Choudhary, Jyoti S.
Publicado em 2014

Sub-minute Phosphoregulation of Cell Cycle Systems during Plasmodium Gamete Formation

Por Invergo, Brandon M., Brochet, Mathieu, Yu, Lu, Choudhary, Jyoti, Beltrao, Pedro, Billker, Oliver
Publicado no Cell Rep (2017)

Quantitative Proteomics Reveals the Basis for the Biochemical Specificity of the Cell Cycle Machinery

Por Pagliuca, Felicia Walton, Collins, Mark O., Lichawska, Agata, Zegerman, Philip, Choudhary, Jyoti S., Pines, Jonathon
Publicado em 2011

Enhanced Peptide Identification by Electron Transfer Dissociation Using an Improved Mascot Percolator

Por Wright, James C., Collins, Mark O., Yu, Lu, Käll, Lukas, Brosch, Markus, Choudhary, Jyoti S.
Publicado em 2012

An Expanded Oct4 Interaction Network: Implications for Stem Cell Biology, Development, and Disease

Por Pardo, Mercedes, Lang, Benjamin, Yu, Lu, Prosser, Haydn, Bradley, Allan, Babu, M. Madan, Choudhary, Jyoti
Publicado em 2010