Using genomics to combat infectious diseases on a global scale

Por Cain, Amy K., Lees, John A.
Publicado no Genome Biol (2015)

Approaches to querying bacterial genomes with transposon-insertion sequencing

Por Barquist, Lars, Boinett, Christine J., Cain, Amy K.
Publicado em 2013

Physical enrichment of transposon mutants from saturation mutant libraries using the TraDISort approach

Por Paulsen, Ian T., Cain, Amy K., Hassan, Karl A.
Publicado no Mob Genet Elements (2017)

The secondary resistome of multidrug-resistant Klebsiella pneumoniae

Por Jana, Bimal, Cain, Amy K., Doerrler, William T., Boinett, Christine J., Fookes, Maria C., Parkhill, Julian, Guardabassi, Luca
Publicado no Sci Rep (2017)

Emergence and Evolution of Multiply Antibiotic-Resistant Salmonella enterica Serovar Paratyphi B d-Tartrate-Utilizing Strains Containing SGI1

Por Djordjevic, Steven P., Cain, Amy K., Evershed, Nick J., Falconer, Linda, Levings, Renee S., Lightfoot, Diane, Hall, Ruth M.
Publicado em 2009

The essential genomic landscape of the commensal Bifidobacterium breve UCC2003

Por Ruiz, Lorena, Bottacini, Francesca, Boinett, Christine J., Cain, Amy K., O’Connell-Motherway, Mary, Lawley, Trevor D., van Sinderen, Douwe
Publicado no Sci Rep (2017)

High-Throughput Analysis of Gene Essentiality and Sporulation in Clostridium difficile

Por Dembek, Marcin, Barquist, Lars, Boinett, Christine J., Cain, Amy K., Mayho, Matthew, Lawley, Trevor D., Fairweather, Neil F., Fagan, Robert P.
Publicado no mBio (2015)

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries

Por Barquist, Lars, Mayho, Matthew, Cummins, Carla, Cain, Amy K., Boinett, Christine J., Page, Andrew J., Langridge, Gemma C., Quail, Michael A., Keane, Jacqueline A., Parkhill, Julian
Publicado no Bioinformatics (2016)

Defining the ABC of gene essentiality in streptococci

Por Charbonneau, Amelia R. L., Forman, Oliver P., Cain, Amy K., Newland, Graham, Robinson, Carl, Boursnell, Mike, Parkhill, Julian, Leigh, James A., Maskell, Duncan J., Waller, Andrew S.
Publicado no BMC Genomics (2017)

The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource

Por Baker, Kate S., Burnett, Edward, McGregor, Hannah, Deheer-Graham, Ana, Boinett, Christine, Langridge, Gemma C., Wailan, Alexander M., Cain, Amy K., Thomson, Nicholas R., Russell, Julie E., Parkhill, Julian
Publicado no Genome Med (2015)

Drug Resistance in Salmonella enterica ser. Typhimurium Bloodstream Infection, Malawi

Por Feasey, Nicholas A., Cain, Amy K., Msefula, Chisomo L., Pickard, Derek, Alaerts, Maaike, Aslett, Martin, Everett, Dean B., Allain, Theresa J., Dougan, Gordon, Gordon, Melita A., Heyderman, Robert S., Kingsley, Robert A.
Publicado em 2014

Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting

Por Musicha, Patrick, Feasey, Nicholas A., Cain, Amy K., Kallonen, Teemu, Chaguza, Chrispin, Peno, Chikondi, Khonga, Margaret, Thompson, Sarah, Gray, Katherine J., Mather, Alison E., Heyderman, Robert S., Everett, Dean B., Thomson, Nicholas R., Msefula, Chisomo L.
Publicado no J Antimicrob Chemother (2017)

Fluorescence-Based Flow Sorting in Parallel with Transposon Insertion Site Sequencing Identifies Multidrug Efflux Systems in Acinetobacter baumannii

Por Hassan, Karl A., Cain, Amy K., Huang, TaoTao, Liu, Qi, Elbourne, Liam D. H., Boinett, Christine J., Brzoska, Anthony J., Li, Liping, Ostrowski, Martin, Nhu, Nguyen Thi Khanh, Nhu, Tran Do Hoang, Baker, Stephen, Parkhill, Julian, Paulsen, Ian T.
Publicado no mBio (2016)

A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae

Por Chung The, Hao, Karkey, Abhilasha, Pham Thanh, Duy, Boinett, Christine J, Cain, Amy K, Ellington, Matthew, Baker, Kate S, Dongol, Sabina, Thompson, Corinne, Harris, Simon R, Jombart, Thibaut, Le Thi Phuong, Tu, Tran Do Hoang, Nhu, Ha Thanh, Tuyen, Shretha, Shrijana, Joshi, Suchita, Basnyat, Buddha, Thwaites, Guy, Thomson, Nicholas R, Rabaa, Maia A, Baker, Stephen
Publicado no EMBO Mol Med (2015)

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

Por Wong, Vanessa K, Baker, Stephen, Pickard, Derek J, Parkhill, Julian, Page, Andrew J, Feasey, Nicholas A, Kingsley, Robert A, Thomson, Nicholas R, Keane, Jacqueline A, Weill, François-Xavier, Edwards, David J, Hawkey, Jane, Harris, Simon R, Mather, Alison E, Cain, Amy K, Hadfield, James, Hart, Peter J, Thieu, Nga Tran Vu, Klemm, Elizabeth J, Glinos, Dafni A, Breiman, Robert F, Watson, Conall H, Kariuki, Samuel, Gordon, Melita A, Heyderman, Robert S, Okoro, Chinyere, Jacobs, Jan, Lunguya, Octavie, Edmunds, W John, Msefula, Chisomo, Chabalgoity, Jose A, Kama, Mike, Jenkins, Kylie, Dutta, Shanta, Marks, Florian, Campos, Josefina, Thompson, Corinne, Obaro, Stephen, MacLennan, Calman A, Dolecek, Christiane, Keddy, Karen H, Smith, Anthony M, Parry, Christopher M, Karkey, Abhilasha, Mulholland, E Kim, Campbell, James I, Dongol, Sabina, Basnyat, Buddha, Dufour, Muriel, Bandaranayake, Don, Naseri, Take Toleafoa, Singh, Shalini Pravin, Hatta, Mochammad, Newton, Paul, Onsare, Robert S, Isaia, Lupeoletalalei, Dance, David, Davong, Viengmon, Thwaites, Guy, Wijedoru, Lalith, Crump, John A, De Pinna, Elizabeth, Nair, Satheesh, Nilles, Eric J, Thanh, Duy Pham, Turner, Paul, Soeng, Sona, Valcanis, Mary, Powling, Joan, Dimovski, Karolina, Hogg, Geoff, Farrar, Jeremy, Holt, Kathryn E, Dougan, Gordon
Publicado no Nat Genet (2015)