Which RNA-Seq Processing Algorithm Should I Pick? A Comparison of RNA-Seq Pipelines Based on Experimental Design, Sample Properties and Sequencing Technology

Por Banks, Zachary, Butty, Vincent, Levine, Stuart
Publicado em 2013

Impact of Diabetes Susceptibility Loci on Progression From Pre-Diabetes to Diabetes in At-Risk Individuals of the Diabetes Prevention Trial–Type 1 (DPT-1)

Por Butty, Vincent, Campbell, Christopher, Mathis, Diane, Benoist, Christophe
Publicado em 2008

Polycomb Repressive Complex 2 Regulates Lineage Fidelity during Embryonic Stem Cell Differentiation

Por Thornton, Seraphim R., Butty, Vincent L., Levine, Stuart S., Boyer, Laurie A.
Publicado em 2014

Signatures of strong population differentiation shape extended haplotypes across the human CD28, CTLA4, and ICOS costimulatory genes

Por Butty, Vincent, Roy, Matt, Sabeti, Pardis, Besse, Whitney, Benoist, Christophe, Mathis, Diane
Publicado em 2007

The genetic basis for individual differences in mRNA splicing and APOBEC1 editing activity in murine macrophages

Por Hassan, Musa A., Butty, Vincent, Jensen, Kirk D.C., Saeij, Jeroen P.J.
Publicado em 2014

Digital genotyping and haplotyping with polymerase colonies

Por Mitra, Robi D., Butty, Vincent L., Shendure, Jay, Williams, Benjamin R., Housman, David E., Church, George M.
Publicado em 2003

Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation

Por Äijö, Tarmo, Butty, Vincent, Chen, Zhi, Salo, Verna, Tripathi, Subhash, Burge, Christopher B., Lahesmaa, Riitta, Lähdesmäki, Harri
Publicado em 2014

Transcriptional and Linkage Analyses Identify Loci that Mediate the Differential Macrophage Response to Inflammatory Stimuli and Infection

Por Hassan, Musa A., Jensen, Kirk D., Butty, Vincent, Hu, Kenneth, Boedec, Erwan, Prins, Pjotr, Saeij, Jeroen P. J.
Publicado no PLoS Genet (2015)

Transcriptional Reversion of Cardiac Myocyte Fate During Mammalian Cardiac Regeneration

Por O’Meara, Caitlin C., Wamstad, Joseph A., Gladstone, Rachel, Fomovsky, Gregory M., Butty, Vincent L., Shrikumar, Avanti, Gannon, Joseph, Boyer, Laurie A., Lee, Richard T.
Publicado no Circ Res (2014)

H2A.Z Acidic Patch Couples Chromatin Dynamics to Regulation of Gene Expression Programs during ESC Differentiation

Por Subramanian, Vidya, Mazumder, Aprotim, Surface, Lauren E., Butty, Vincent L., Fields, Paul A., Alwan, Allison, Torrey, Lillian, Thai, Kevin K., Levine, Stuart S., Bathe, Mark, Boyer, Laurie A.
Publicado em 2013

Geometry-dependent functional changes in iPSC-derived cardiomyocytes probed by functional imaging and RNA sequencing

Por Werley, Christopher A., Chien, Miao-Ping, Gaublomme, Jellert, Shekhar, Karthik, Butty, Vincent, Yi, B. Alexander, Kralj, Joel M., Bloxham, Blox, Boyer, Laurie A., Regev, Aviv, Cohen, Adam E.
Publicado no PLoS One (2017)

Multiplexed DNA repair assays for multiple lesions and multiple doses via transcription inhibition and transcriptional mutagenesis

Por Nagel, Zachary D., Margulies, Carrie M., Chaim, Isaac A., McRee, Siobhan K., Mazzucato, Patrizia, Ahmad, Anwaar, Abo, Ryan P., Butty, Vincent L., Forget, Anthony L., Samson, Leona D.
Publicado em 2014

A Broad Analysis of IL1 Polymorphism and Rheumatoid Arthritis

Por Johnsen, Alyssa K., Plenge, Robert M., Butty, Vincent, Campbell, Christopher, Dieguez-Gonzalez, Rebeca, Gomez-Reino, Juan J., Shadick, Nancy, Weinblatt, Michael, Gonzalez, Antonio, Gregersen, Peter K., Benoist, Christophe, Mathis, Diane
Publicado em 2008

Transcriptional Analysis of Murine Macrophages Infected with Different Toxoplasma Strains Identifies Novel Regulation of Host Signaling Pathways

Por Melo, Mariane B., Nguyen, Quynh P., Cordeiro, Cynthia, Hassan, Musa A., Yang, Ninghan, McKell, Renée, Rosowski, Emily E., Julien, Lindsay, Butty, Vincent, Dardé, Marie-Laure, Ajzenberg, Daniel, Fitzgerald, Katherine, Young, Lucy H., Saeij, Jeroen P. J.
Publicado em 2013

Braveheart, a long non-coding RNA required for cardiovascular lineage commitment

Por Klattenhoff, Carla, Scheuermann, Johanna C., Surface, Lauren E., Bradley, Robert K., Fields, Paul A., Steinhauser, Matthew L., Ding, Huiming, Butty, Vincent L., Torrey, Lillian, Haas, Simon, Abo, Ryan, Tabebordbar, Mohammadsharif, Lee, Richard T., Burge, Christopher B., Boyer, Laurie A.
Publicado em 2013

Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences

Por Cao, Bo, Chen, Chao, DeMott, Michael S., Cheng, Qiuxiang, Clark, Tyson A., Xiong, Xiaolin, Zheng, Xiaoqing, Butty, Vincent, Levine, Stuart S., Yuan, George, Boitano, Matthew, Luong, Khai, Song, Yi, Zhou, Xiufen, Deng, Zixin, Turner, Stephen W., Korlach, Jonas, You, Delin, Wang, Lianrong, Chen, Shi, Dedon, Peter C.
Publicado no Nat Commun (2014)