Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis

Autor Bolduc, Benjamin, Wirth, Jennifer F, Mazurie, Aurélien, Young, Mark J
Vydáno v ISME J (2015)

The Prevalence of STIV c92-Like Proteins in Acidic Thermal Environments

Autor Snyder, Jamie C., Bolduc, Benjamin, Bateson, Mary M., Young, Mark J.
Vydáno 2011

iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure

Autor Bolduc, Benjamin, Youens-Clark, Ken, Roux, Simon, Hurwitz, Bonnie L, Sullivan, Matthew B
Vydáno v ISME J (2017)

Cenote-Taker 2 democratizes virus discovery and sequence annotation

Autor Tisza, Michael J, Belford, Anna K, Domínguez-Huerta, Guillermo, Bolduc, Benjamin, Buck, Christopher B
Vydáno v Virus Evol (2020)

vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria

Autor Bolduc, Benjamin, Jang, Ho Bin, Doulcier, Guilhem, You, Zhi-Qiang, Roux, Simon, Sullivan, Matthew B.
Vydáno v PeerJ (2017)

The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut

Autor Gregory, Ann C., Zablocki, Olivier, Zayed, Ahmed A., Howell, Allison, Bolduc, Benjamin, Sullivan, Matthew B.
Vydáno v Cell Host Microbe (2020)

Identification of Novel Positive-Strand RNA Viruses by Metagenomic Analysis of Archaea-Dominated Yellowstone Hot Springs

Autor Bolduc, Benjamin, Shaughnessy, Daniel P., Wolf, Yuri I., Koonin, Eugene V., Roberto, Francisco F., Young, Mark
Vydáno 2012

Reply to “Codon Usage Frequency of RNA Virus Genomes from High-Temperature Acidic-Environment Metagenomes”

Autor Young, Mark, Bolduc, Benjamin, Shaughnessy, Daniel P., Roberto, Francisco F., Wolf, Yuri I., Koonin, Eugene V.
Vydáno 2013

Biotic and Environmental Drivers of Plant Microbiomes Across a Permafrost Thaw Gradient

Autor Hough, Moira, McClure, Amelia, Bolduc, Benjamin, Dorrepaal, Ellen, Saleska, Scott, Klepac-Ceraj, Vanja, Rich, Virginia
Vydáno v Front Microbiol (2020)

Healthy human gut phageome

Autor Manrique, Pilar, Bolduc, Benjamin, Walk, Seth T., van der Oost, John, de Vos, Willem M., Young, Mark J.
Vydáno v Proc Natl Acad Sci U S A (2016)

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

Autor Trubl, Gareth, Roux, Simon, Solonenko, Natalie, Li, Yueh-Fen, Bolduc, Benjamin, Rodríguez-Ramos, Josué, Eloe-Fadrosh, Emiley A., Rich, Virginia I., Sullivan, Matthew B.
Vydáno v PeerJ (2019)

Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters

Autor Gazitúa, M. Consuelo, Vik, Dean R., Roux, Simon, Gregory, Ann C., Bolduc, Benjamin, Widner, Brittany, Mulholland, Margaret R., Hallam, Steven J., Ulloa, Osvaldo, Sullivan, Matthew B.
Vydáno v ISME J (2020)

Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation

Autor Pratama, Akbar Adjie, Bolduc, Benjamin, Zayed, Ahmed A., Zhong, Zhi-Ping, Guo, Jiarong, Vik, Dean R., Gazitúa, Maria Consuelo, Wainaina, James M., Roux, Simon, Sullivan, Matthew B.
Vydáno v PeerJ (2021)

Viral Ecogenomics of Arctic Cryopeg Brine and Sea Ice

Autor Zhong, Zhi-Ping, Rapp, Josephine Z., Wainaina, James M., Solonenko, Natalie E., Maughan, Heather, Carpenter, Shelly D., Cooper, Zachary S., Jang, Ho Bin, Bolduc, Benjamin, Deming, Jody W., Sullivan, Matthew B.
Vydáno v mSystems (2020)

Single-virus genomics reveals hidden cosmopolitan and abundant viruses

Autor Martinez-Hernandez, Francisco, Fornas, Oscar, Lluesma Gomez, Monica, Bolduc, Benjamin, de la Cruz Peña, Maria Jose, Martínez, Joaquín Martínez, Anton, Josefa, Gasol, Josep M., Rosselli, Riccardo, Rodriguez-Valera, Francisco, Sullivan, Matthew B., Acinas, Silvia G., Martinez-Garcia, Manuel
Vydáno v Nat Commun (2017)

Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing

Autor Trubl, Gareth, Jang, Ho Bin, Roux, Simon, Emerson, Joanne B., Solonenko, Natalie, Vik, Dean R., Solden, Lindsey, Ellenbogen, Jared, Runyon, Alexander T., Bolduc, Benjamin, Woodcroft, Ben J., Saleska, Scott R., Tyson, Gene W., Wrighton, Kelly C., Sullivan, Matthew B., Rich, Virginia I.
Vydáno v mSystems (2018)

DRAM for distilling microbial metabolism to automate the curation of microbiome function

Autor Shaffer, Michael, Borton, Mikayla A, McGivern, Bridget B, Zayed, Ahmed A, La Rosa, Sabina Leanti, Solden, Lindsey M, Liu, Pengfei, Narrowe, Adrienne B, Rodríguez-Ramos, Josué, Bolduc, Benjamin, Gazitúa, M Consuelo, Daly, Rebecca A, Smith, Garrett J, Vik, Dean R, Pope, Phil B, Sullivan, Matthew B, Roux, Simon, Wrighton, Kelly C
Vydáno v Nucleic Acids Res (2020)

Host-linked soil viral ecology along a permafrost thaw gradient

Autor Emerson, Joanne B., Roux, Simon, Brum, Jennifer R., Bolduc, Benjamin, Woodcroft, Ben J., Jang, Ho Bin, Singleton, Caitlin M., Solden, Lindsey M., Naas, Adrian E., Boyd, Joel A., Hodgkins, Suzanne B., Wilson, Rachel M., Trubl, Gareth, Li, Changsheng, Frolking, Steve, Pope, Phillip B., Wrighton, Kelly C., Crill, Patrick M., Chanton, Jeffrey P., Saleska, Scott R., Tyson, Gene W., Rich, Virginia I., Sullivan, Matthew B.
Vydáno v Nat Microbiol (2018)