Towards mechanistic classification of enzyme functions

מאת Almonacid, Daniel E., Babbitt, Patricia C.
יצא לאור 2011

Quantitative Comparison of Catalytic Mechanisms and Overall Reactions in Convergently Evolved Enzymes: Implications for Classification of Enzyme Function

מאת Almonacid, Daniel E., Yera, Emmanuel R., Mitchell, John B. O., Babbitt, Patricia C.
יצא לאור 2010

Using Reaction Mechanism to Measure Enzyme Similarity

מאת O’Boyle, Noel M., Holliday, Gemma L., Almonacid, Daniel E., Mitchell, John B.O.
יצא לאור 2007

MACiE: exploring the diversity of biochemical reactions

מאת Holliday, Gemma L., Andreini, Claudia, Fischer, Julia D., Rahman, Syed Asad, Almonacid, Daniel E., Williams, Sophie T., Pearson, William R.
יצא לאור 2012

The role of a sequencing-based clinical intestinal screening test in patients at high-risk for Clostridium difficile and other pathogens: a case report

מאת Hitschfeld, Maureen, Tovar, Elena, Gupta, Sarah, Bik, Elisabeth M., Palmer, Christina, Hoaglin, Michael C., Almonacid, Daniel E., Richman, Jessica, Apte, Zachary S.
הוצא לאור ב J Med Case Rep (2019)

MACiE: A Database of Enzyme Reaction Mechanisms

מאת Holliday, Gemma L., Bartlett, Gail J., Almonacid, Daniel E., O’Boyle, Noel M., Murray-Rust, Peter, Thornton, Janet M., Mitchell, John B. O.
יצא לאור 2005

Draft Genome Sequence of Blautia luti DSM 14534(T), Isolated from Human Stool

מאת Ortiz, Rodrigo L., Melis-Arcos, Felipe, Covarrubias, Paulo C., Ugalde, Juan A., Apte, Zachary S., Pérez-Donoso, José, Cárdenas, Juan P., Almonacid, Daniel E.
הוצא לאור ב Microbiol Resour Announc (2020)

A Transient Receptor Potential Ion Channel in Chlamydomonas Shares Key Features with Sensory Transduction-Associated TRP Channels in Mammals

מאת Arias-Darraz, Luis, Cabezas, Deny, Colenso, Charlotte K., Alegría-Arcos, Melissa, Bravo-Moraga, Felipe, Varas-Concha, Ignacio, Almonacid, Daniel E., Madrid, Rodolfo, Brauchi, Sebastian
הוצא לאור ב Plant Cell (2015)

16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome

מאת Almonacid, Daniel E., Kraal, Laurens, Ossandon, Francisco J., Budovskaya, Yelena V., Cardenas, Juan Pablo, Bik, Elisabeth M., Goddard, Audrey D., Richman, Jessica, Apte, Zachary S.
הוצא לאור ב PLoS One (2017)

Correction: 16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome

מאת Almonacid, Daniel E., Kraal, Laurens, Ossandon, Francisco J., Budovskaya, Yelena V., Cardenas, Juan Pablo, Bik, Elisabeth M., Goddard, Audrey D., Richman, Jessica, Apte, Zachary S.
הוצא לאור ב PLoS One (2019)

Gut microbiome composition and risk factors in a large cross-sectional IBS cohort

מאת Agnello, Melissa, Carroll, Lauren N, Imam, Nabeel, Pino, Rodolfo, Palmer, Christina, Varas, Ignacio, Greene, Claire, Hitschfeld, Maureen, Gupta, Sarah, Almonacid, Daniel E, Hoaglin, Michael C
הוצא לאור ב BMJ Open Gastroenterol (2020)

MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms

מאת Holliday, Gemma L., Almonacid, Daniel E., Bartlett, Gail J., O'Boyle, Noel M., Torrance, James W., Murray-Rust, Peter, Mitchell, John B. O., Thornton, Janet M.
יצא לאור 2007

Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily

מאת Wallrapp, Frank H., Pan, Jian-Jung, Ramamoorthy, Gurusankar, Almonacid, Daniel E., Hillerich, Brandan S., Seidel, Ronald, Patskovsky, Yury, Babbitt, Patricia C., Almo, Steven C., Jacobson, Matthew P., Poulter, C. Dale
יצא לאור 2013

Participation of the Salmonella OmpD Porin in the Infection of RAW264.7 Macrophages and BALB/c Mice

מאת Ipinza, Francisco, Collao, Bernardo, Monsalva, Debbie, Bustamante, Victor H., Luraschi, Roberto, Alegría-Arcos, Melissa, Almonacid, Daniel E., Aguayo, Daniel, Calderón, Iván L., Gil, Fernando, Santiviago, Carlos A., Morales, Eduardo H., Calva, Edmundo, Saavedra, Claudia P.
יצא לאור 2014

Self-Sampling for Human Papillomavirus Testing: Increased Cervical Cancer Screening Participation and Incorporation in International Screening Programs

מאת Gupta, Sarah, Palmer, Christina, Bik, Elisabeth M., Cardenas, Juan P., Nuñez, Harold, Kraal, Laurens, Bird, Sara W., Bowers, Jennie, Smith, Alison, Walton, Nathaniel A., Goddard, Audrey D., Almonacid, Daniel E., Zneimer, Susan, Richman, Jessica, Apte, Zachary S.
הוצא לאור ב Front Public Health (2018)

The Structure–Function Linkage Database

מאת Akiva, Eyal, Brown, Shoshana, Almonacid, Daniel E., Barber, Alan E., Custer, Ashley F., Hicks, Michael A., Huang, Conrad C., Lauck, Florian, Mashiyama, Susan T., Meng, Elaine C., Mischel, David, Morris, John H., Ojha, Sunil, Schnoes, Alexandra M., Stryke, Doug, Yunes, Jeffrey M., Ferrin, Thomas E., Holliday, Gemma L., Babbitt, Patricia C.
יצא לאור 2014

A novel sequencing-based vaginal health assay combining self-sampling, HPV detection and genotyping, STI detection, and vaginal microbiome analysis

מאת Bik, Elisabeth M., Bird, Sara W., Bustamante, Juan P., Leon, Luis E., Nieto, Pamela A., Addae, Kwasi, Alegría-Mera, Víctor, Bravo, Cristian, Bravo, Denisse, Cardenas, Juan P., Carson, Glenn A., Caughey, Adam, Covarrubias, Paulo C., Pérez-Donoso, José, Gass, Graham, Gupta, Sarah L., Harman, Kira, Hongo, Donna Marie B., Jiménez, Juan C., Kraal, Laurens, Melis-Arcos, Felipe, Morales, Eduardo H., Morton, Amanda, Navas, Camila F., Nuñez, Harold, Olivares, Eduardo, Órdenes-Aenishanslins, Nicolás, Ossandon, Francisco J., Phan, Richard, Pino, Raul, Soto-Liebe, Katia, Varas, Ignacio, Vera-Wolf, Patricia, Walton, Nathaniel A., Almonacid, Daniel E., Goddard, Audrey D., Ugalde, Juan A., Zneimer, Susan, Richman, Jessica, Apte, Zachary S.
הוצא לאור ב PLoS One (2019)