Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud

著者: Griffith, Malachi, Walker, Jason R., Spies, Nicholas C., Ainscough, Benjamin J., Griffith, Obi L.
出版年 PLoS Comput Biol (2015)

Organizing knowledge to enable personalization of medicine in cancer

著者: Good, Benjamin M, Ainscough, Benjamin J, McMichael, Josh F, Su, Andrew I, Griffith, Obi L
出版年 Genome Biol (2014)

Ptau-Aβ(42) ratio as a continuous trait for biomarker discovery for early stage Alzheimer’s disease in multiplex immunoassay panels of Cerebrospinal fluid

著者: Harari, Oscar, Cruchaga, Carlos, Kauwe, John S.K., Ainscough, Benjamin J., Bales, Kelly, Pickering, Eve H., Bertelsen, Sarah, Fagan, Anne M., Holtzman, David M., Morris, John C., Goate, Alison M.
出版事項 2014

DoCM: a database of curated mutations in cancer

著者: Ainscough, Benjamin J., Griffith, Malachi, Coffman, Adam C, Wagner, Alex H., Kunisaki, Jason, Choudhary, Mayank NK, McMichael, Joshua F., Fulton, Robert S., Wilson, Richard K., Griffith, Obi L., Mardis, Elaine R.
出版年 Nat Methods (2016)

A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data

著者: Ainscough, Benjamin J., Barnell, Erica K., Ronning, Peter, Campbell, Katie M., Wagner, Alex H., Fehniger, Todd A., Dunn, Gavin P., Uppaluri, Ravindra, Govindan, Ramaswamy, Rohan, Thomas E., Griffith, Malachi, Mardis, Elaine R., Swamidass, S. Joshua, Griffith, Obi L.
出版年 Nat Genet (2018)

High-performance web services for querying gene and variant annotation

著者: Xin, Jiwen, Mark, Adam, Afrasiabi, Cyrus, Tsueng, Ginger, Juchler, Moritz, Gopal, Nikhil, Stupp, Gregory S., Putman, Timothy E., Ainscough, Benjamin J., Griffith, Obi L., Torkamani, Ali, Whetzel, Patricia L., Mungall, Christopher J., Mooney, Sean D., Su, Andrew I., Wu, Chunlei
出版年 Genome Biol (2016)

DGIdb 2.0: mining clinically relevant drug–gene interactions

著者: Wagner, Alex H., Coffman, Adam C., Ainscough, Benjamin J., Spies, Nicholas C., Skidmore, Zachary L., Campbell, Katie M., Krysiak, Kilannin, Pan, Deng, McMichael, Joshua F., Eldred, James M., Walker, Jason R., Wilson, Richard K., Mardis, Elaine R., Griffith, Malachi, Griffith, Obi L.
出版年 Nucleic Acids Res (2016)

Genome-Wide Association Study of CSF Levels of 59 Alzheimer's Disease Candidate Proteins: Significant Associations with Proteins Involved in Amyloid Processing and Inflammation

著者: Kauwe, John S. K., Bailey, Matthew H., Ridge, Perry G., Perry, Rachel, Wadsworth, Mark E., Hoyt, Kaitlyn L., Staley, Lyndsay A., Karch, Celeste M., Harari, Oscar, Cruchaga, Carlos, Ainscough, Benjamin J., Bales, Kelly, Pickering, Eve H., Bertelsen, Sarah, Fagan, Anne M., Holtzman, David M., Morris, John C., Goate, Alison M.
出版事項 2014

Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples

著者: Barnell, Erica K., Ronning, Peter, Campbell, Katie M., Krysiak, Kilannin, Ainscough, Benjamin J., Sheta, Lana M., Pema, Shahil P., Schmidt, Alina D., Richters, Megan, Cotto, Kelsy C., Danos, Arpad M., Ramirez, Cody, Skidmore, Zachary L., Spies, Nicholas C., Hundal, Jasreet, Sediqzad, Malik S., Kunisaki, Jason, Gomez, Felicia, Trani, Lee, Matlock, Matthew, Wagner, Alex H., Swamidass, S. Joshua, Griffith, Malachi, Griffith, Obi L.
出版年 Genet Med (2018)

Convergent loss of PTEN leads to clinical resistance to a PI3Kα inhibitor

著者: Juric, Dejan, Castel, Pau, Griffith, Malachi, Griffith, Obi L., Won, Helen H., Ellis, Haley, Ebbesen, Saya H., Ainscough, Benjamin J., Ramu, Avinash, Iyer, Gopa, Shah, Ronak H., Huynh, Tiffany, Mino-Kenudson, Mari, Sgroi, Dennis, Isakoff, Steven, Thabet, Ashraf, Elamine, Leila, Solit, David B., Lowe, Scott W., Quadt, Cornelia, Peters, Malte, Derti, Adnan, Schegel, Robert, Huang, Alan, Mardis, Elaine R., Berger, Michael F., Baselga, José, Scaltriti., Maurizio
出版年 Nature (2014)

The prognostic effects of somatic mutations in ER-positive breast cancer

著者: Griffith, Obi L., Spies, Nicholas C., Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L., Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E., Davies, Sherri, Kavuri, Shyam M., Chang, Eric C., Magrini, Vincent, Larson, David E., Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K., Nielsen, Torsten O., Mardis, Elaine R, Ellis, Matthew J.
出版年 Nat Commun (2018)

Author Correction: The prognostic effects of somatic mutations in ER-positive breast cancer

著者: Griffith, Obi L., Spies, Nicholas C., Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L., Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E., Davies, Sherri, Kavuri, Shyam M., Chang, Eric C., Magrini, Vincent, Larson, David E., Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K., Nielsen, Torsten O., Mardis, Elaine R, Ellis, Matthew J.
出版年 Nat Commun (2018)

Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B lymphoblastic leukemia

著者: Griffith, Malachi, Griffith, Obi L., Krysiak, Kilannin, Skidmore, Zachary L., Christopher, Matthew J., Klco, Jeffery M., Ramu, Avinash, Lamprecht, Tamara L., Wagner, Alex H., Campbell, Katie M., Lesurf, Robert, Hundal, Jasreet, Zhang, Jin, Spies, Nicholas C., Ainscough, Benjamin J., Larson, David E., Heath, Sharon E., Fronick, Catrina, O'Laughlin, Shelly, Fulton, Robert, Magrini, Vincent, McGrath, Sean, Smith, Scott M., Miller, Christopher A., Maher, Christopher A., Payton, Jacqueline E., Walker, Jason R., Eldred, James M., Walter, Matthew J., Link, Daniel C., Graubert, Timothy A., Westervelt, Peter, Kulkarni, Shashikant, DiPersio, John F., Mardis, Elaine R., Wilson, Richard K., Ley, Timothy J.
出版年 Exp Hematol (2016)

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

著者: Griffith, Malachi, Spies, Nicholas C, Krysiak, Kilannin, McMichael, Joshua F, Coffman, Adam C, Danos, Arpad M, Ainscough, Benjamin J, Ramirez, Cody A, Rieke, Damian T, Kujan, Lynzey, Barnell, Erica K, Wagner, Alex H, Skidmore, Zachary L, Wollam, Amber, Liu, Connor J, Jones, Martin R, Bilski, Rachel L, Lesurf, Robert, Feng, Yan-Yang, Shah, Nakul M, Bonakdar, Melika, Trani, Lee, Matlock, Matthew, Ramu, Avinash, Campbell, Katie M, Spies, Gregory C, Graubert, Aaron P, Gangavarapu, Karthik, Eldred, James M, Larson, David E, Walker, Jason R, Good, Benjamin M, Wu, Chunlei, Su, Andrew I, Dienstmann, Rodrigo, Margolin, Adam A, Tamborero, David, Lopez-Bigas, Nuria, Jones, Steven J M, Bose, Ron, Spencer, David H, Wartman, Lukas D, Wilson, Richard K, Mardis, Elaine R, Griffith, Obi L
出版年 Nat Genet (2017)

Genome Modeling System: A Knowledge Management Platform for Genomics

著者: Griffith, Malachi, Griffith, Obi L., Smith, Scott M., Ramu, Avinash, Callaway, Matthew B., Brummett, Anthony M., Kiwala, Michael J., Coffman, Adam C., Regier, Allison A., Oberkfell, Ben J., Sanderson, Gabriel E., Mooney, Thomas P., Nutter, Nathaniel G., Belter, Edward A., Du, Feiyu, Long, Robert L., Abbott, Travis E., Ferguson, Ian T., Morton, David L., Burnett, Mark M., Weible, James V., Peck, Joshua B., Dukes, Adam, McMichael, Joshua F., Lolofie, Justin T., Derickson, Brian R., Hundal, Jasreet, Skidmore, Zachary L., Ainscough, Benjamin J., Dees, Nathan D., Schierding, William S., Kandoth, Cyriac, Kim, Kyung H., Lu, Charles, Harris, Christopher C., Maher, Nicole, Maher, Christopher A., Magrini, Vincent J., Abbott, Benjamin S., Chen, Ken, Clark, Eric, Das, Indraniel, Fan, Xian, Hawkins, Amy E., Hepler, Todd G., Wylie, Todd N., Leonard, Shawn M., Schroeder, William E., Shi, Xiaoqi, Carmichael, Lynn K., Weil, Matthew R., Wohlstadter, Richard W., Stiehr, Gary, McLellan, Michael D., Pohl, Craig S., Miller, Christopher A., Koboldt, Daniel C., Walker, Jason R., Eldred, James M., Larson, David E., Dooling, David J., Ding, Li, Mardis, Elaine R., Wilson, Richard K.
出版年 PLoS Comput Biol (2015)