Implementation of the CDC translational informatics platform - from genetic variants to the national Swedish Rheumatology Quality Register

Bằng Abugessaisa, Imad, Gomez-Cabrero, David, Snir, Omri, Lindblad, Staffan, Klareskog, Lars, Malmström, Vivianne, Tegnér, Jesper
Được phát hành 2013

STATegra EMS: an Experiment Management System for complex next-generation omics experiments

Bằng Hernández-de-Diego, Rafael, Boix-Chova, Noemi, Gómez-Cabrero, David, Tegner, Jesper, Abugessaisa, Imad, Conesa, Ana
Được phát hành 2014

Accelerating Translational Research by Clinically Driven Development of an Informatics Platform–A Case Study

Bằng Abugessaisa, Imad, Saevarsdottir, Saedis, Tsipras, Giorgos, Lindblad, Staffan, Sandin, Charlotta, Nikamo, Pernilla, Ståhle, Mona, Malmström, Vivianne, Klareskog, Lars, Tegnér, Jesper
Được phát hành 2014

FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies

Bằng Abugessaisa, Imad, Noguchi, Shuhei, Hasegawa, Akira, Harshbarger, Jayson, Kondo, Atsushi, Lizio, Marina, Severin, Jessica, Carninci, Piero, Kawaji, Hideya, Kasukawa, Takeya
Xuất bản năm Sci Data (2017)

Data integration in the era of omics: current and future challenges

Bằng Gomez-Cabrero, David, Abugessaisa, Imad, Maier, Dieter, Teschendorff, Andrew, Merkenschlager, Matthias, Gisel, Andreas, Ballestar, Esteban, Bongcam-Rudloff, Erik, Conesa, Ana, Tegnér, Jesper
Được phát hành 2014

FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki

Bằng Abugessaisa, Imad, Shimoji, Hisashi, Sahin, Serkan, Kondo, Atsushi, Harshbarger, Jayson, Lizio, Marina, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair, Kasukawa, Takeya, Kawaji, Hideya
Xuất bản năm Database (Oxford) (2016)

SCPortalen: human and mouse single-cell centric database

Bằng Abugessaisa, Imad, Noguchi, Shuhei, Böttcher, Michael, Hasegawa, Akira, Kouno, Tsukasa, Kato, Sachi, Tada, Yuhki, Ura, Hiroki, Abe, Kuniya, Shin, Jay W, Plessy, Charles, Carninci, Piero, Kasukawa, Takeya
Xuất bản năm Nucleic Acids Res (2018)

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

Bằng Lizio, Marina, Abugessaisa, Imad, Noguchi, Shuhei, Kondo, Atsushi, Hasegawa, Akira, Hon, Chung Chau, de Hoon, Michiel, Severin, Jessica, Oki, Shinya, Hayashizaki, Yoshihide, Carninci, Piero, Kasukawa, Takeya, Kawaji, Hideya
Xuất bản năm Nucleic Acids Res (2019)

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

Bằng Bertin, Nicolas, Mendez, Mickaël, Hasegawa, Akira, Lizio, Marina, Abugessaisa, Imad, Severin, Jessica, Sakai-Ohno, Mizuho, Lassmann, Timo, Kasukawa, Takeya, Kawaji, Hideya, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Carninci, Piero, Plessy, Charles
Xuất bản năm Sci Data (2017)

Monitoring transcription initiation activities in rat and dog

Bằng Lizio, Marina, Mukarram, Abdul Kadir, Ohno, Mizuho, Watanabe, Shoko, Itoh, Masayoshi, Hasegawa, Akira, Lassmann, Timo, Severin, Jessica, Harshbarger, Jayson, Abugessaisa, Imad, Kasukawa, Takeya, Hon, Chung Chau, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R.R., Kawaji, Hideya
Xuất bản năm Sci Data (2017)

Systems Medicine: from molecular features and models to the clinic in COPD

Bằng Gomez-Cabrero, David, Menche, Jörg, Cano, Isaac, Abugessaisa, Imad, Huertas-Migueláñez, Mercedes, Tenyi, Akos, de Mas, Igor Marin, Kiani, Narsis A, Marabita, Francesco, Falciani, Francesco, Burrowes, Kelly, Maier, Dieter, Wagner, Peter, Selivanov, Vitaly, Cascante, Marta, Roca, Josep, Barabási, Albert-László, Tegnér, Jesper
Xuất bản năm J Transl Med (2014)

Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

Bằng Francescatto, Margherita, Lizio, Marina, Philippens, Ingrid, Pardo, Luba M., Bontrop, Ronald, Sakai, Mizuho, Watanabe, Shoko, Itoh, Masayoshi, Hasegawa, Akira, Lassmann, Timo, Severin, Jessica, Harshbarger, Jayson, Abugessaisa, Imad, Kasukawa, Takeya, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Kawaji, Hideya, Rizzu, Patrizia, Heutink, Peter
Xuất bản năm Sci Data (2017)

Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

Bằng Francescatto, Margherita, Lizio, Marina, Philippens, Ingrid, Pardo, Luba M., Bontrop, Ronald, Sakai, Mizuho, Watanabe, Shoko, Itoh, Masayoshi, Hasegawa, Akira, Lassmann, Timo, Severin, Jessica, Harshbarger, Jayson, Abugessaisa, Imad, Kasukawa, Takeya, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Kawaji, Hideya, Rizzu, Patrizia, Heutink, Peter
Xuất bản năm Sci Data (2018)

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

Bằng Lizio, Marina, Harshbarger, Jayson, Abugessaisa, Imad, Noguchi, Shuei, Kondo, Atsushi, Severin, Jessica, Mungall, Chris, Arenillas, David, Mathelier, Anthony, Medvedeva, Yulia A., Lennartsson, Andreas, Drabløs, Finn, Ramilowski, Jordan A., Rackham, Owen, Gough, Julian, Andersson, Robin, Sandelin, Albin, Ienasescu, Hans, Ono, Hiromasa, Bono, Hidemasa, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R.R., Kasukawa, Takeya, Kawaji, Hideya
Xuất bản năm Nucleic Acids Res (2017)

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

Bằng Kouno, Tsukasa, Moody, Jonathan, Kwon, Andrew Tae-Jun, Shibayama, Youtaro, Kato, Sachi, Huang, Yi, Böttcher, Michael, Motakis, Efthymios, Mendez, Mickaël, Severin, Jessica, Luginbühl, Joachim, Abugessaisa, Imad, Hasegawa, Akira, Takizawa, Satoshi, Arakawa, Takahiro, Furuno, Masaaki, Ramalingam, Naveen, West, Jay, Suzuki, Harukazu, Kasukawa, Takeya, Lassmann, Timo, Hon, Chung-Chau, Arner, Erik, Carninci, Piero, Plessy, Charles, Shin, Jay W.
Xuất bản năm Nat Commun (2019)

Comparative transcriptomics of primary cells in vertebrates

Bằng Alam, Tanvir, Agrawal, Saumya, Severin, Jessica, Young, Robert S., Andersson, Robin, Arner, Erik, Hasegawa, Akira, Lizio, Marina, Ramilowski, Jordan A., Abugessaisa, Imad, Ishizu, Yuri, Noma, Shohei, Tarui, Hiroshi, Taylor, Martin S., Lassmann, Timo, Itoh, Masayoshi, Kasukawa, Takeya, Kawaji, Hideya, Marchionni, Luigi, Sheng, Guojun, R.R. Forrest, Alistair, Khachigian, Levon M., Hayashizaki, Yoshihide, Carninci, Piero, de Hoon, Michiel J.L.
Xuất bản năm Genome Res (2020)

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

Bằng Abugessaisa, Imad, Ramilowski, Jordan A, Lizio, Marina, Severin, Jesicca, Hasegawa, Akira, Harshbarger, Jayson, Kondo, Atsushi, Noguchi, Shuhei, Yip, Chi Wai, Ooi, Jasmine Li Ching, Tagami, Michihira, Hori, Fumi, Agrawal, Saumya, Hon, Chung Chau, Cardon, Melissa, Ikeda, Shuya, Ono, Hiromasa, Bono, Hidemasa, Kato, Masaki, Hashimoto, Kosuke, Bonetti, Alessandro, Kato, Masaki, Kobayashi, Norio, Shin, Jay, de Hoon, Michiel, Hayashizaki, Yoshihide, Carninci, Piero, Kawaji, Hideya, Kasukawa, Takeya
Xuất bản năm Nucleic Acids Res (2020)

A robust machine learning framework to identify signatures for frailty: a nested case-control study in four aging European cohorts

Bằng Gomez-Cabrero, David, Walter, Stefan, Abugessaisa, Imad, Miñambres-Herraiz, Rebeca, Palomares, Lucia Bernad, Butcher, Lee, Erusalimsky, Jorge D., Garcia-Garcia, Francisco Jose, Carnicero, José, Hardman, Timothy C., Mischak, Harald, Zürbig, Petra, Hackl, Matthias, Grillari, Johannes, Fiorillo, Edoardo, Cucca, Francesco, Cesari, Matteo, Carrie, Isabelle, Colpo, Marco, Bandinelli, Stefania, Feart, Catherine, Peres, Karine, Dartigues, Jean-François, Helmer, Catherine, Viña, José, Olaso, Gloria, García-Palmero, Irene, Martínez, Jorge García, Jansen-Dürr, Pidder, Grune, Tilman, Weber, Daniela, Lippi, Giuseppe, Bonaguri, Chiara, Sinclair, Alan J, Tegner, Jesper, Rodriguez-Mañas, Leocadio
Xuất bản năm GeroScience (2021)

Gateways to the FANTOM5 promoter level mammalian expression atlas

Bằng Lizio, Marina, Harshbarger, Jayson, Shimoji, Hisashi, Severin, Jessica, Kasukawa, Takeya, Sahin, Serkan, Abugessaisa, Imad, Fukuda, Shiro, Hori, Fumi, Ishikawa-Kato, Sachi, Mungall, Christopher J, Arner, Erik, Baillie, J Kenneth, Bertin, Nicolas, Bono, Hidemasa, de Hoon, Michiel, Diehl, Alexander D, Dimont, Emmanuel, Freeman, Tom C, Fujieda, Kaori, Hide, Winston, Kaliyaperumal, Rajaram, Katayama, Toshiaki, Lassmann, Timo, Meehan, Terrence F, Nishikata, Koro, Ono, Hiromasa, Rehli, Michael, Sandelin, Albin, Schultes, Erik A, ‘t Hoen, Peter AC, Tatum, Zuotian, Thompson, Mark, Toyoda, Tetsuro, Wright, Derek W, Daub, Carsten O, Itoh, Masayoshi, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair RR, Kawaji, Hideya
Xuất bản năm Genome Biol (2015)

An atlas of human long non-coding RNAs with accurate 5′ ends

Bằng Hon, Chung-Chau, Ramilowski, Jordan A., Harshbarger, Jayson, Bertin, Nicolas, Rackham, Owen J. L., Gough, Julian, Denisenko, Elena, Schmeier, Sebastian, Poulsen, Thomas M., Severin, Jessica, Lizio, Marina, Kawaji, Hideya, Kasukawa, Takeya, Itoh, Masayoshi, Burroughs, A. Maxwell, Noma, Shohei, Djebali, Sarah, Alam, Tanvir, Medvedeva, Yulia A., Testa, Alison C., Lipovich, Leonard, Yip, Chi-Wai, Abugessaisa, Imad, Mendez, Mickaël, Hasegawa, Akira, Tang, Dave, Lassmann, Timo, Heutink, Peter, Babina, Magda, Wells, Christine A., Kojima, Soichi, Nakamura, Yukio, Suzuki, Harukazu, Daub, Carsten O., de Hoon, Michiel J. L., Arner, Erik, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R. R.
Xuất bản năm Nature (2017)