SpaGE: Spatial Gene Enhancement using scRNA-seq

le Abdelaal, Tamim, Mourragui, Soufiane, Mahfouz, Ahmed, Reinders, Marcel J T
Foilsithe in Nucleic Acids Res (2020)

Predicting Cell Populations in Single Cell Mass Cytometry Data

le Abdelaal, Tamim, van Unen, Vincent, Höllt, Thomas, Koning, Frits, Reinders, Marcel J.T., Mahfouz, Ahmed
Foilsithe in Cytometry A (2019)

A comparison of automatic cell identification methods for single-cell RNA sequencing data

le Abdelaal, Tamim, Michielsen, Lieke, Cats, Davy, Hoogduin, Dylan, Mei, Hailiang, Reinders, Marcel J. T., Mahfouz, Ahmed
Foilsithe in Genome Biol (2019)

CyTOFmerge: integrating mass cytometry data across multiple panels

le Abdelaal, Tamim, Höllt, Thomas, van Unen, Vincent, Lelieveldt, Boudewijn P F, Koning, Frits, Reinders, Marcel J T, Mahfouz, Ahmed
Foilsithe in Bioinformatics (2019)

Phenotypic Characterization by Mass Cytometry of the Microenvironment in Ovarian Cancer and Impact of Tumor Dissociation Methods

le Anandan, Shamundeeswari, Thomsen, Liv Cecilie V., Gullaksen, Stein-Erik, Abdelaal, Tamim, Kleinmanns, Katrin, Skavland, Jørn, Bredholt, Geir, Gjertsen, Bjørn Tore, McCormack, Emmet, Bjørge, Line
Foilsithe in Cancers (Basel) (2021)

Early-Life Compartmentalization of Immune Cells in Human Fetal Tissues Revealed by High-Dimensional Mass Cytometry

le Li, Na, van Unen, Vincent, Guo, Nannan, Abdelaal, Tamim, Somarakis, Antonios, Eggermont, Jeroen, Mahfouz, Ahmed, Chuva de Sousa Lopes, Susana M., Lelieveldt, Boudewijn P. F., Koning, Frits
Foilsithe in Front Immunol (2019)

Memory CD8(+) T cell heterogeneity is primarily driven by pathogen-specific cues and additionally shaped by the tissue environment

le van der Gracht, Esmé T.I., Beyrend, Guillaume, Abdelaal, Tamim, Pardieck, Iris N., Wesselink, Thomas H., van Haften, Floortje J., van Duikeren, Suzanne, Koning, Frits, Arens, Ramon
Foilsithe in iScience (2020)

High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity

le de Vries, Natasja L, van Unen, Vincent, Ijsselsteijn, Marieke E, Abdelaal, Tamim, van der Breggen, Ruud, Farina Sarasqueta, Arantza, Mahfouz, Ahmed, Peeters, Koen C M J, Höllt, Thomas, Lelieveldt, Boudewijn P F, Koning, Frits, de Miranda, Noel F C C
Foilsithe in Gut (2020)

Memory CD4(+) T cells are generated in the human fetal intestine

le Li, Na, van Unen, Vincent, Abdelaal, Tamim, Guo, Nannan, Kasatskaya, Sofya A., Ladell, Kristin, McLaren, James E., Egorov, Evgeny S., Izraelson, Mark, Chuva de Sousa Lopes, Susana M., Höllt, Thomas, Britanova, Olga V, Eggermont, Jeroen, de Miranda, Noel F.C.C., Chudakov, Dmitriy M., Price, David A., Lelieveldt, Boudewijn P.F., Koning, Frits
Foilsithe in Nat Immunol (2019)