RiboFlow, RiboR and RiboPy: an ecosystem for analyzing ribosome profiling data at read length resolution

Bằng Ozadam, Hakan, Geng, Michael, Cenik, Can
Xuất bản năm Bioinformatics (2020)

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq

Bằng Kucukural, Alper, Özadam, Hakan, Singh, Guramrit, Moore, Melissa J., Cenik, Can
Được phát hành 2013

An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments

Bằng Heyer, Erin E., Ozadam, Hakan, Ricci, Emiliano P., Cenik, Can, Moore, Melissa J.
Xuất bản năm Nucleic Acids Res (2015)

Loss of coordinated expression between ribosomal and mitochondrial genes revealed by comprehensive characterization of a large family with a rare Mendelian disorder

Bằng Panici, Brendan, Nakajima, Hosei, Carlston, Colleen M., Ozadam, Hakan, Cenik, Can, Cenik, Elif Sarinay
Xuất bản năm Genomics (2021)

A chromosome folding intermediate at the condensin-to-cohesin transition during telophase

Bằng Abramo, Kristin, Valton, Anne-Laure, Venev, Sergey V., Ozadam, Hakan, Fox, A. Nicole, Dekker, Job
Xuất bản năm Nat Cell Biol (2019)

Transcriptome-wide interrogation of the functional intronome by spliceosome profiling

Bằng Chen, Weijun, Moore, Jill, Ozadam, Hakan, Shulha, Hennady P., Rhind, Nicholas, Weng, Zhiping, Moore, Melissa J.
Xuất bản năm Cell (2018)

Genes with 5′ terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein

Bằng Rao, Shilpa, Hoskins, Ian, Tonn, Tori, Garcia, P. Daniela, Ozadam, Hakan, Cenik, Elif Sarinay, Cenik, Can
Xuất bản năm bioRxiv (2021)

Higher-Order Organization Principles of Pre-translational mRNPs

Bằng Metkar, Mihir, Ozadam, Hakan, Lajoie, Bryan R., Imakaev, Maxim, Mirny, Leonid A., Dekker, Job, Moore, Melissa J.
Xuất bản năm Mol Cell (2018)

Transcriptional silencers in Drosophila serve a dual role as transcriptional enhancers in alternate cellular contexts

Bằng Gisselbrecht, Stephen S., Palagi, Alexandre, Kurland, Jesse V., Rogers, Julia M., Ozadam, Hakan, Zhan, Ye, Dekker, Job, Bulyk, Martha L.
Xuất bản năm Mol Cell (2019)

Large domains of heterochromatin direct the formation of short mitotic chromosome loops

Bằng Fitz-James, Maximilian H, Tong, Pin, Pidoux, Alison L, Ozadam, Hakan, Yang, Liyan, White, Sharon A, Dekker, Job, Allshire, Robin C
Xuất bản năm eLife (2020)

The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes

Bằng Rodríguez-Carballo, Eddie, Lopez-Delisle, Lucille, Zhan, Ye, Fabre, Pierre J., Beccari, Leonardo, El-Idrissi, Imane, Huynh, Thi Hanh Nguyen, Ozadam, Hakan, Dekker, Job, Duboule, Denis
Xuất bản năm Genes Dev (2017)

The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome

Bằng Gdula, Michal R., Nesterova, Tatyana B., Pintacuda, Greta, Godwin, Jonathan, Zhan, Ye, Ozadam, Hakan, McClellan, Michael, Moralli, Daniella, Krueger, Felix, Green, Catherine M., Reik, Wolf, Kriaucionis, Skirmantas, Heard, Edith, Dekker, Job, Brockdorff, Neil
Xuất bản năm Nat Commun (2019)

Measuring the reproducibility and quality of Hi-C data

Bằng Yardımcı, Galip Gürkan, Ozadam, Hakan, Sauria, Michael E. G., Ursu, Oana, Yan, Koon-Kiu, Yang, Tao, Chakraborty, Abhijit, Kaul, Arya, Lajoie, Bryan R., Song, Fan, Zhan, Ye, Ay, Ferhat, Gerstein, Mark, Kundaje, Anshul, Li, Qunhua, Taylor, James, Yue, Feng, Dekker, Job, Noble, William S.
Xuất bản năm Genome Biol (2019)

Integrative Detection and Analysis of Structural Variation in Cancer Genomes

Bằng Dixon, Jesse R., Xu, Jie, Dileep, Vishnu, Zhan, Ye, Song, Fan, Le, Victoria T., Gürkan Yardımcı, Galip, Chakraborty, Abhijit, Bann, Darrin V., Wang, Yanli, Clark, Royden, Zhang, Lijun, Yang, Hongbo, Liu, Tingting, Iyyanki, Sriranga, An, Lin, Pool, Christopher, Sasaki, Takayo, Rivera-Mulia, Juan Carlos, Ozadam, Hakan, Lajoie, Bryan R., Kaul, Rajinder, Buckley, Michael, Lee, Kristen, Diegel, Morgan, Pezic, Dubravka, Ernst, Christina, Hadjur, Suzana, Odom, Duncan T., Stamatoyannopoulos, John A., Broach, James R., Hardison, Ross C., Ay, Ferhat, Stafford Noble, William, Dekker, Job, Gilbert, David M., Yue, Feng
Xuất bản năm Nat Genet (2018)