RiboFlow, RiboR and RiboPy: an ecosystem for analyzing ribosome profiling data at read length resolution

Por Ozadam, Hakan, Geng, Michael, Cenik, Can
Publicado no Bioinformatics (2020)

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq

Por Kucukural, Alper, Özadam, Hakan, Singh, Guramrit, Moore, Melissa J., Cenik, Can
Publicado em 2013

An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments

Por Heyer, Erin E., Ozadam, Hakan, Ricci, Emiliano P., Cenik, Can, Moore, Melissa J.
Publicado no Nucleic Acids Res (2015)

Loss of coordinated expression between ribosomal and mitochondrial genes revealed by comprehensive characterization of a large family with a rare Mendelian disorder

Por Panici, Brendan, Nakajima, Hosei, Carlston, Colleen M., Ozadam, Hakan, Cenik, Can, Cenik, Elif Sarinay
Publicado no Genomics (2021)

A chromosome folding intermediate at the condensin-to-cohesin transition during telophase

Por Abramo, Kristin, Valton, Anne-Laure, Venev, Sergey V., Ozadam, Hakan, Fox, A. Nicole, Dekker, Job
Publicado no Nat Cell Biol (2019)

Transcriptome-wide interrogation of the functional intronome by spliceosome profiling

Por Chen, Weijun, Moore, Jill, Ozadam, Hakan, Shulha, Hennady P., Rhind, Nicholas, Weng, Zhiping, Moore, Melissa J.
Publicado no Cell (2018)

Genes with 5′ terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein

Por Rao, Shilpa, Hoskins, Ian, Tonn, Tori, Garcia, P. Daniela, Ozadam, Hakan, Cenik, Elif Sarinay, Cenik, Can
Publicado no bioRxiv (2021)

Higher-Order Organization Principles of Pre-translational mRNPs

Por Metkar, Mihir, Ozadam, Hakan, Lajoie, Bryan R., Imakaev, Maxim, Mirny, Leonid A., Dekker, Job, Moore, Melissa J.
Publicado no Mol Cell (2018)

Transcriptional silencers in Drosophila serve a dual role as transcriptional enhancers in alternate cellular contexts

Por Gisselbrecht, Stephen S., Palagi, Alexandre, Kurland, Jesse V., Rogers, Julia M., Ozadam, Hakan, Zhan, Ye, Dekker, Job, Bulyk, Martha L.
Publicado no Mol Cell (2019)

Large domains of heterochromatin direct the formation of short mitotic chromosome loops

Por Fitz-James, Maximilian H, Tong, Pin, Pidoux, Alison L, Ozadam, Hakan, Yang, Liyan, White, Sharon A, Dekker, Job, Allshire, Robin C
Publicado no eLife (2020)

The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes

Por Rodríguez-Carballo, Eddie, Lopez-Delisle, Lucille, Zhan, Ye, Fabre, Pierre J., Beccari, Leonardo, El-Idrissi, Imane, Huynh, Thi Hanh Nguyen, Ozadam, Hakan, Dekker, Job, Duboule, Denis
Publicado no Genes Dev (2017)

The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome

Por Gdula, Michal R., Nesterova, Tatyana B., Pintacuda, Greta, Godwin, Jonathan, Zhan, Ye, Ozadam, Hakan, McClellan, Michael, Moralli, Daniella, Krueger, Felix, Green, Catherine M., Reik, Wolf, Kriaucionis, Skirmantas, Heard, Edith, Dekker, Job, Brockdorff, Neil
Publicado no Nat Commun (2019)

Measuring the reproducibility and quality of Hi-C data

Por Yardımcı, Galip Gürkan, Ozadam, Hakan, Sauria, Michael E. G., Ursu, Oana, Yan, Koon-Kiu, Yang, Tao, Chakraborty, Abhijit, Kaul, Arya, Lajoie, Bryan R., Song, Fan, Zhan, Ye, Ay, Ferhat, Gerstein, Mark, Kundaje, Anshul, Li, Qunhua, Taylor, James, Yue, Feng, Dekker, Job, Noble, William S.
Publicado no Genome Biol (2019)

Integrative Detection and Analysis of Structural Variation in Cancer Genomes

Por Dixon, Jesse R., Xu, Jie, Dileep, Vishnu, Zhan, Ye, Song, Fan, Le, Victoria T., Gürkan Yardımcı, Galip, Chakraborty, Abhijit, Bann, Darrin V., Wang, Yanli, Clark, Royden, Zhang, Lijun, Yang, Hongbo, Liu, Tingting, Iyyanki, Sriranga, An, Lin, Pool, Christopher, Sasaki, Takayo, Rivera-Mulia, Juan Carlos, Ozadam, Hakan, Lajoie, Bryan R., Kaul, Rajinder, Buckley, Michael, Lee, Kristen, Diegel, Morgan, Pezic, Dubravka, Ernst, Christina, Hadjur, Suzana, Odom, Duncan T., Stamatoyannopoulos, John A., Broach, James R., Hardison, Ross C., Ay, Ferhat, Stafford Noble, William, Dekker, Job, Gilbert, David M., Yue, Feng
Publicado no Nat Genet (2018)