RiboFlow, RiboR and RiboPy: an ecosystem for analyzing ribosome profiling data at read length resolution

ανά Ozadam, Hakan, Geng, Michael, Cenik, Can
Τόπος έκδοσης Bioinformatics (2020)

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq

ανά Kucukural, Alper, Özadam, Hakan, Singh, Guramrit, Moore, Melissa J., Cenik, Can
Έκδοση 2013

An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments

ανά Heyer, Erin E., Ozadam, Hakan, Ricci, Emiliano P., Cenik, Can, Moore, Melissa J.
Τόπος έκδοσης Nucleic Acids Res (2015)

Loss of coordinated expression between ribosomal and mitochondrial genes revealed by comprehensive characterization of a large family with a rare Mendelian disorder

ανά Panici, Brendan, Nakajima, Hosei, Carlston, Colleen M., Ozadam, Hakan, Cenik, Can, Cenik, Elif Sarinay
Τόπος έκδοσης Genomics (2021)

A chromosome folding intermediate at the condensin-to-cohesin transition during telophase

ανά Abramo, Kristin, Valton, Anne-Laure, Venev, Sergey V., Ozadam, Hakan, Fox, A. Nicole, Dekker, Job
Τόπος έκδοσης Nat Cell Biol (2019)

Transcriptome-wide interrogation of the functional intronome by spliceosome profiling

ανά Chen, Weijun, Moore, Jill, Ozadam, Hakan, Shulha, Hennady P., Rhind, Nicholas, Weng, Zhiping, Moore, Melissa J.
Τόπος έκδοσης Cell (2018)

Genes with 5′ terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein

ανά Rao, Shilpa, Hoskins, Ian, Tonn, Tori, Garcia, P. Daniela, Ozadam, Hakan, Cenik, Elif Sarinay, Cenik, Can
Τόπος έκδοσης bioRxiv (2021)

Higher-Order Organization Principles of Pre-translational mRNPs

ανά Metkar, Mihir, Ozadam, Hakan, Lajoie, Bryan R., Imakaev, Maxim, Mirny, Leonid A., Dekker, Job, Moore, Melissa J.
Τόπος έκδοσης Mol Cell (2018)

Transcriptional silencers in Drosophila serve a dual role as transcriptional enhancers in alternate cellular contexts

ανά Gisselbrecht, Stephen S., Palagi, Alexandre, Kurland, Jesse V., Rogers, Julia M., Ozadam, Hakan, Zhan, Ye, Dekker, Job, Bulyk, Martha L.
Τόπος έκδοσης Mol Cell (2019)

Large domains of heterochromatin direct the formation of short mitotic chromosome loops

ανά Fitz-James, Maximilian H, Tong, Pin, Pidoux, Alison L, Ozadam, Hakan, Yang, Liyan, White, Sharon A, Dekker, Job, Allshire, Robin C
Τόπος έκδοσης eLife (2020)

The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes

ανά Rodríguez-Carballo, Eddie, Lopez-Delisle, Lucille, Zhan, Ye, Fabre, Pierre J., Beccari, Leonardo, El-Idrissi, Imane, Huynh, Thi Hanh Nguyen, Ozadam, Hakan, Dekker, Job, Duboule, Denis
Τόπος έκδοσης Genes Dev (2017)

The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome

ανά Gdula, Michal R., Nesterova, Tatyana B., Pintacuda, Greta, Godwin, Jonathan, Zhan, Ye, Ozadam, Hakan, McClellan, Michael, Moralli, Daniella, Krueger, Felix, Green, Catherine M., Reik, Wolf, Kriaucionis, Skirmantas, Heard, Edith, Dekker, Job, Brockdorff, Neil
Τόπος έκδοσης Nat Commun (2019)

Measuring the reproducibility and quality of Hi-C data

ανά Yardımcı, Galip Gürkan, Ozadam, Hakan, Sauria, Michael E. G., Ursu, Oana, Yan, Koon-Kiu, Yang, Tao, Chakraborty, Abhijit, Kaul, Arya, Lajoie, Bryan R., Song, Fan, Zhan, Ye, Ay, Ferhat, Gerstein, Mark, Kundaje, Anshul, Li, Qunhua, Taylor, James, Yue, Feng, Dekker, Job, Noble, William S.
Τόπος έκδοσης Genome Biol (2019)

Integrative Detection and Analysis of Structural Variation in Cancer Genomes

ανά Dixon, Jesse R., Xu, Jie, Dileep, Vishnu, Zhan, Ye, Song, Fan, Le, Victoria T., Gürkan Yardımcı, Galip, Chakraborty, Abhijit, Bann, Darrin V., Wang, Yanli, Clark, Royden, Zhang, Lijun, Yang, Hongbo, Liu, Tingting, Iyyanki, Sriranga, An, Lin, Pool, Christopher, Sasaki, Takayo, Rivera-Mulia, Juan Carlos, Ozadam, Hakan, Lajoie, Bryan R., Kaul, Rajinder, Buckley, Michael, Lee, Kristen, Diegel, Morgan, Pezic, Dubravka, Ernst, Christina, Hadjur, Suzana, Odom, Duncan T., Stamatoyannopoulos, John A., Broach, James R., Hardison, Ross C., Ay, Ferhat, Stafford Noble, William, Dekker, Job, Gilbert, David M., Yue, Feng
Τόπος έκδοσης Nat Genet (2018)