RiboFlow, RiboR and RiboPy: an ecosystem for analyzing ribosome profiling data at read length resolution

بواسطة Ozadam, Hakan, Geng, Michael, Cenik, Can
الحاوية / القاعدة Bioinformatics (2020)

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq

بواسطة Kucukural, Alper, Özadam, Hakan, Singh, Guramrit, Moore, Melissa J., Cenik, Can
منشور في 2013

An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments

بواسطة Heyer, Erin E., Ozadam, Hakan, Ricci, Emiliano P., Cenik, Can, Moore, Melissa J.
الحاوية / القاعدة Nucleic Acids Res (2015)

Loss of coordinated expression between ribosomal and mitochondrial genes revealed by comprehensive characterization of a large family with a rare Mendelian disorder

بواسطة Panici, Brendan, Nakajima, Hosei, Carlston, Colleen M., Ozadam, Hakan, Cenik, Can, Cenik, Elif Sarinay
الحاوية / القاعدة Genomics (2021)

A chromosome folding intermediate at the condensin-to-cohesin transition during telophase

بواسطة Abramo, Kristin, Valton, Anne-Laure, Venev, Sergey V., Ozadam, Hakan, Fox, A. Nicole, Dekker, Job
الحاوية / القاعدة Nat Cell Biol (2019)

Transcriptome-wide interrogation of the functional intronome by spliceosome profiling

بواسطة Chen, Weijun, Moore, Jill, Ozadam, Hakan, Shulha, Hennady P., Rhind, Nicholas, Weng, Zhiping, Moore, Melissa J.
الحاوية / القاعدة Cell (2018)

Genes with 5′ terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein

بواسطة Rao, Shilpa, Hoskins, Ian, Tonn, Tori, Garcia, P. Daniela, Ozadam, Hakan, Cenik, Elif Sarinay, Cenik, Can
الحاوية / القاعدة bioRxiv (2021)

Higher-Order Organization Principles of Pre-translational mRNPs

بواسطة Metkar, Mihir, Ozadam, Hakan, Lajoie, Bryan R., Imakaev, Maxim, Mirny, Leonid A., Dekker, Job, Moore, Melissa J.
الحاوية / القاعدة Mol Cell (2018)

Transcriptional silencers in Drosophila serve a dual role as transcriptional enhancers in alternate cellular contexts

بواسطة Gisselbrecht, Stephen S., Palagi, Alexandre, Kurland, Jesse V., Rogers, Julia M., Ozadam, Hakan, Zhan, Ye, Dekker, Job, Bulyk, Martha L.
الحاوية / القاعدة Mol Cell (2019)

Large domains of heterochromatin direct the formation of short mitotic chromosome loops

بواسطة Fitz-James, Maximilian H, Tong, Pin, Pidoux, Alison L, Ozadam, Hakan, Yang, Liyan, White, Sharon A, Dekker, Job, Allshire, Robin C
الحاوية / القاعدة eLife (2020)

The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes

بواسطة Rodríguez-Carballo, Eddie, Lopez-Delisle, Lucille, Zhan, Ye, Fabre, Pierre J., Beccari, Leonardo, El-Idrissi, Imane, Huynh, Thi Hanh Nguyen, Ozadam, Hakan, Dekker, Job, Duboule, Denis
الحاوية / القاعدة Genes Dev (2017)

The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome

بواسطة Gdula, Michal R., Nesterova, Tatyana B., Pintacuda, Greta, Godwin, Jonathan, Zhan, Ye, Ozadam, Hakan, McClellan, Michael, Moralli, Daniella, Krueger, Felix, Green, Catherine M., Reik, Wolf, Kriaucionis, Skirmantas, Heard, Edith, Dekker, Job, Brockdorff, Neil
الحاوية / القاعدة Nat Commun (2019)

Measuring the reproducibility and quality of Hi-C data

بواسطة Yardımcı, Galip Gürkan, Ozadam, Hakan, Sauria, Michael E. G., Ursu, Oana, Yan, Koon-Kiu, Yang, Tao, Chakraborty, Abhijit, Kaul, Arya, Lajoie, Bryan R., Song, Fan, Zhan, Ye, Ay, Ferhat, Gerstein, Mark, Kundaje, Anshul, Li, Qunhua, Taylor, James, Yue, Feng, Dekker, Job, Noble, William S.
الحاوية / القاعدة Genome Biol (2019)

Integrative Detection and Analysis of Structural Variation in Cancer Genomes

بواسطة Dixon, Jesse R., Xu, Jie, Dileep, Vishnu, Zhan, Ye, Song, Fan, Le, Victoria T., Gürkan Yardımcı, Galip, Chakraborty, Abhijit, Bann, Darrin V., Wang, Yanli, Clark, Royden, Zhang, Lijun, Yang, Hongbo, Liu, Tingting, Iyyanki, Sriranga, An, Lin, Pool, Christopher, Sasaki, Takayo, Rivera-Mulia, Juan Carlos, Ozadam, Hakan, Lajoie, Bryan R., Kaul, Rajinder, Buckley, Michael, Lee, Kristen, Diegel, Morgan, Pezic, Dubravka, Ernst, Christina, Hadjur, Suzana, Odom, Duncan T., Stamatoyannopoulos, John A., Broach, James R., Hardison, Ross C., Ay, Ferhat, Stafford Noble, William, Dekker, Job, Gilbert, David M., Yue, Feng
الحاوية / القاعدة Nat Genet (2018)