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Computational Alanine Scanning with Linear Scaling Semi-Empirical Quantum Mechanical Methods
Analyzing computer system performance with perl::PDQ

Tuneable resolution as a systems biology approach for multi-scale, multi-compartment computational models
Integrative analysis of large-scale loss-of-function screens identifies robust cancer-associated genetic interactions

Dynamics of visual motion processing neuronal, behavioral, and computational approaches /
Automated Methods Enable Direct Computation on Phenotypic Descriptions for Novel Candidate Gene Prediction

A general model for metabolic scaling in self-similar asymmetric networks
Computing on Phenotypic Descriptions for Candidate Gene Discovery and Crop Improvement

Mapping land cover change over continental Africa using Landsat and Google Earth Engine cloud computing
Telescope: an interactive tool for managing large-scale analysis from mobile devices

Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0
Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks

Large-scale in-silico identification of a tumor-specific antigen pool for targeted immunotherapy in triple-negative breast cancer
Empowering Senior Cochlear Implant Users at Home via a Tablet Computer Application

Large-scale analysis of UPR-mediated apoptosis in human cells
Computational Investigation of RNA CUG Repeats Responsible for Myotonic Dystrophy 1

Principles of proteome allocation are revealed using proteomic data and genome-scale models
Creating a more robust 5-hydroxymethylfurfural oxidase by combining computational predictions with a novel effective library design

MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank
Scale-insensitive estimation of speed and distance traveled from animal tracking data

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