SNP Selection in Genome-Wide and Candidate Gene Studies via Penalized Logistic Regression

Por Ayers, Kristin L, Cordell, Heather J
Publicado em 2010

An efficient genome-wide association test for multivariate phenotypes based on the Fisher combination function

Por Yang, James J., Li, Jia, Williams, L. Keoki, Buu, Anne
Publicado no BMC Bioinformatics (2016)

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

Por Nathan D. Grubaugh, Karthik Gangavarapu, Joshua Quick, Nathaniel L. Matteson, Jaqueline Goes De Jesus, Bradley J. Main, Amanda L. Tan, Lauren M. Paul, Doug E. Brackney, Saran Grewal, Nikos Gurfield, Koen K. A. Van Rompay, Sharon Isern, Scott F. Michael, Lark L. Coffey, Nicholas J. Loman, Kristian G. Andersen
Publicado em 2019-01-01

pLARmEB: integration of least angle regression with empirical Bayes for multilocus genome-wide association studies

Por Zhang, J, Feng, J-Y, Ni, Y-L, Wen, Y-J, Niu, Y, Tamba, C L, Yue, C, Song, Q, Zhang, Y-M
Publicado no Heredity (Edinb) (2017)

Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip

Por Muñoz, M., Bozzi, R., García-Casco, J., Núñez, Y., Ribani, A., Franci, O., García, F., Škrlep, M., Schiavo, G., Bovo, S., Utzeri, V. J., Charneca, R., Martins, J. M., Quintanilla, R., Tibau, J., Margeta, V., Djurkin-Kušec, I., Mercat, M. J., Riquet, J., Estellé, J., Zimmer, C., Razmaite, V., Araujo, J. P., Radović, Č., Savić, R., Karolyi, D., Gallo, M., Čandek-Potokar, M., Fernández, A. I., Fontanesi, L., Óvilo, C.
Publicado no Sci Rep (2019)

Using selection index theory to estimate consistency of multi-locus linkage disequilibrium across populations

Por Wientjes, Yvonne C.J., Veerkamp, Roel F., Calus, Mario P.L.
Publicado no BMC Genet (2015)

A Simple Procedure for the Analysis of Single Nucleotide Polymorphisms Facilitates Map-Based Cloning in Arabidopsis

Por Drenkard, E., Richter, B. G., Rozen, S., Stutius, L. M., Angell, N. A., Mindrinos, M., Cho, R. J., Oefner, P. J., Davis, R. W., Ausubel, F. M.
Publicado em 2000

Systematic Evaluation of Whole Genome Sequence-Based Predictions of Salmonella Serotype and Antimicrobial Resistance

Por Ashley L. Cooper, Ashley L. Cooper, Andrew J. Low, Adam G. Koziol, Matthew C. Thomas, Daniel Leclair, Sandeep Tamber, Alex Wong, Burton W. Blais, Burton W. Blais, Catherine D. Carrillo
Publicado em 2020-04-01

Genome-Wide Study of Percent Emphysema on Computed Tomography in the General Population. The Multi...

Por Manichaikul, Ani, Hoffman, Eric A., Smolonska, Joanna, Gao, Wei, Cho, Michael H., Baumhauer, Heather, Budoff, Matthew, Austin, John H. M., Washko, George R., Carr, J. Jeffrey, Kaufman, Joel D., Pottinger, Tess, Powell, Charles A., Wijmenga, Cisca, Zanen, Pieter, Groen, Harry J. M., Postma, Dirkje S., Wanner, Adam, Rouhani, Farshid N., Brantly, Mark L., Powell, Rhea, Smith, Benjamin M., Rabinowitz, Dan, Raffel, Leslie J., Hinckley Stukovsky, Karen D., Crapo, James D., Beaty, Terri H., Hokanson, John E., Silverman, Edwin K., Dupuis, Josée, O’Connor, George T., Boezen, H. Marike, Rich, Stephen S., Barr, R. Graham
Publicado em 2014

A Fast EM Algorithm for BayesA-Like Prediction of Genomic Breeding Values

Por Sun, Xiaochen, Qu, Long, Garrick, Dorian J., Dekkers, Jack C. M., Fernando, Rohan L.
Publicado em 2012

Massively expedited genome-wide heritability analysis (MEGHA)

Por Ge, Tian, Nichols, Thomas E., Lee, Phil H., Holmes, Avram J., Roffman, Joshua L., Buckner, Randy L., Sabuncu, Mert R., Smoller, Jordan W.
Publicado no Proc Natl Acad Sci U S A (2015)

Grid-based stochastic search for hierarchical gene-gene interactions in population-based genetic studies of common human diseases

Por Moore, Jason H., Andrews, Peter C., Olson, Randal S., Carlson, Sarah E., Larock, Curt R., Bulhoes, Mario J., O’Connor, James P., Greytak, Ellen M., Armentrout, Steven L.
Publicado no BioData Min (2017)

In-Silico Computing of the Most Deleterious nsSNPs in HBA1 Gene

Por AbdulAzeez, Sayed, Borgio, J. Francis
Publicado no PLoS One (2016)

Computational and Functional Analysis of the Virus-Receptor Interface Reveals Host Range Trade-Offs in New World Arenaviruses

Por Kerr, Scott A., Jackson, Eleisha L., Lungu, Oana I., Meyer, Austin G., Demogines, Ann, Ellington, Andrew D., Georgiou, George, Wilke, Claus O., Sawyer, Sara L.
Publicado no J Virol (2015)

Voxelwise gene-wide association study (vGeneWAS): multivariate gene-based association testing in 731 elderly subjects

Por Hibar, Derrek P., Stein, Jason L., Kohannim, Omid, Jahanshad, Neda, Saykin, Andrew J., Shen, Li, Kim, Sungeun, Pankratz, Nathan, Foroud, Tatiana, Huentelman, Matthew J., Potkin, Steven G., Jack, Clifford R., Weiner, Michael W., Toga, Arthur W., Thompson, Paul M.
Publicado em 2011

Quantification of subclonal distributions of recurrent genomic aberrations in paired pre-treatment and relapse samples from patients with B-cell chronic lymphocytic leukemia

Por Knight, S J L, Yau, C, Clifford, R, Timbs, A T, Sadighi Akha, E, Dréau, H M, Burns, A, Ciria, C, Oscier, D G, Pettitt, A R, Dutton, S, Holmes, C C, Taylor, J, Cazier, J-B, Schuh, A
Publicado em 2012

Longitudinal Genotype–Phenotype Association Study through Temporal Structure Auto-Learning Predictive Model

Por Wang, Xiaoqian, Yan, Jingwen, Yao, Xiaohui, Kim, Sungeun, Nho, Kwangsik, Risacher, Shannon L., Saykin, Andrew J., Shen, Li, Huang, Heng
Publicado no J Comput Biol (2018)

Flanking monomer repeats define lower context complexity of sites containing single nucleotide polymorphisms in the human genome

Por N. S. Safronova, M. P. Ponomarenko, I. I. Abnizova, G. V. Orlova, I. V. Chadaeva, Y. L. Orlov
Publicado em 2016-01-01

Genetic architecture of resilience of executive functioning

Por Mukherjee, Shubhabrata, Kim, Sungeun, Gibbons, Laura E., Nho, Kwangsik, Risacher, Shannon L., Glymour, M. Maria, Habeck, Christian, Lee, Grace J., Mormino, Elizabeth, Ertekin-Taner, Nilüfer, Montine, Thomas J., DeCarli, Charles, Saykin, Andrew J., Crane, Paul K.
Publicado em 2012

Rapid Testing of SNPs and Gene–Environment Interactions in Case–Parent Trio Data Based on Exact Analytic Parameter Estimation

Por Schwender, Holger, Taub, Margaret A., Beaty, Terri H., Marazita, Mary L., Ruczinski, Ingo
Publicado em 2011