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CONCUR: quick and robust calculation of codon usage from ribosome profiling data

SUMMARY: CONCUR is a standalone tool for codon usage analysis in ribosome profiling experiments. CONCUR uses the aligned reads in BAM format to estimate codon counts at the ribosome E-, P- and A-sites and at flanking positions. AVAILABILITY AND IMPLEMENTATION: CONCUR is written in Perl and is freely...

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Dettagli Bibliografici
Pubblicato in:Bioinformatics
Autori principali: Frye, Michaela, Bornelöv, Susanne
Natura: Artigo
Lingua:Inglês
Pubblicazione: Oxford University Press 2020
Soggetti:
Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC8097682/
https://ncbi.nlm.nih.gov/pubmed/32866237
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btaa733
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