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Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics

BACKGROUND: Enrichment or over-representation analysis is a common method used in bioinformatics studies of transcriptomics, metabolomics, and microbiome datasets. The key idea behind enrichment analysis is: given a set of significantly expressed genes (or metabolites), use that set to infer a small...

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Foilsithe in:BMC Genomics
Main Authors: Karp, Peter D., Midford, Peter E., Caspi, Ron, Khodursky, Arkady
Formáid: Artigo
Teanga:Inglês
Foilsithe: BioMed Central 2021
Ábhair:
Rochtain Ar Líne:https://ncbi.nlm.nih.gov/pmc/articles/PMC7967953/
https://ncbi.nlm.nih.gov/pubmed/33726670
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12864-021-07502-8
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