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Ratatosk: hybrid error correction of long reads enables accurate variant calling and assembly

A major challenge to long read sequencing data is their high error rate of up to 15%. We present Ratatosk, a method to correct long reads with short read data. We demonstrate on 5 human genome trios that Ratatosk reduces the error rate of long reads 6-fold on average with a median error rate as low...

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Detalhes bibliográficos
Publicado no:Genome Biol
Main Authors: Holley, Guillaume, Beyter, Doruk, Ingimundardottir, Helga, Møller, Peter L., Kristmundsdottir, Snædis, Eggertsson, Hannes P., Halldorsson, Bjarni V.
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2021
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Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC7792008/
https://ncbi.nlm.nih.gov/pubmed/33419473
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13059-020-02244-4
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