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Properties of Cavities in Biological Structures—A Survey of the Protein Data Bank

We performed a PDB-wide survey of proteins to assess their cavity content, using the SPACEBALL algorithm to calculate the cavity volumes. In addition, we determined the hydropathy character of the cavities. We demonstrate that the cavities of most proteins are hydrophilic, but smaller proteins tend...

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Detalhes bibliográficos
Publicado no:Front Mol Biosci
Main Authors: Chwastyk, Mateusz, Panek, Ewa A., Malinowski, Jan, Jaskólski, Mariusz, Cieplak, Marek
Formato: Artigo
Idioma:Inglês
Publicado em: Frontiers Media S.A. 2020
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC7677499/
https://ncbi.nlm.nih.gov/pubmed/33240933
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3389/fmolb.2020.591381
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