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K-mer counting and curated libraries drive efficient annotation of repeats in plant genomes

The annotation of repetitive sequences within plant genomes can help in the interpretation of observed phenotypes. Moreover, repeat masking is required for tasks such as whole-genome alignment, promoter analysis, or pangenome exploration. Although homology-based annotation methods are computationall...

Ausführliche Beschreibung

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Bibliographische Detailangaben
Veröffentlicht in:Plant Genome
Hauptverfasser: Contreras-Moreira, Bruno, Filippi, Carla V, Naamati, Guy, Girón, Carlos García, Allen, James E, Flicek, Paul
Format: Artigo
Sprache:Inglês
Veröffentlicht: 2021
Schlagworte:
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC7614178/
https://ncbi.nlm.nih.gov/pubmed/34562304
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1002/tpg2.20143
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