KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis

Genomic DNA is the best “unique identifier” for organisms. Alignment-free phylogenomic analysis, simple, fast, and efficient method to compare genome sequences, relies on looking at the distribution of small DNA sequence of a particular length, referred to as k-mer. The k-mer approach has been explo...

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Detalhes bibliográficos
Publicado no:Front Bioeng Biotechnol
Main Authors: Pornputtapong, Natapol, Acheampong, Daniel A., Patumcharoenpol, Preecha, Jenjaroenpun, Piroon, Wongsurawat, Thidathip, Jun, Se-Ran, Yongkiettrakul, Suganya, Chokesajjawatee, Nipa, Nookaew, Intawat
Formato: Artigo
Idioma:Inglês
Publicado em: Frontiers Media S.A. 2020
Assuntos:
Bioengineering and Biotechnology
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC7538862/
https://ncbi.nlm.nih.gov/pubmed/33072720
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3389/fbioe.2020.556413
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