Assessment of genome annotation using gene function similarity within the gene neighborhood

מאת Jun, Se-Ran, Nookaew, Intawat, Hauser, Loren, Gorin, Andrey
הוצא לאור ב BMC Bioinformatics (2017)

869. Outbreak of Vancomycin Resistant Enterococcus faecium (VREfm) in a Hematology Unit Identified Through Whole Genome Sequencing

מאת Krishnan, Gayathri, Udaondo, Zulema, Jun, Se-Ran, Kothari, Atul
הוצא לאור ב Open Forum Infect Dis (2020)

Global mapping of the protein structure space and application in structure-based inference of protein function

מאת Hou, Jingtong, Jun, Se-Ran, Zhang, Chao, Kim, Sung-Hou
יצא לאור 2005

Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer

מאת Zhang, Qian, Jun, Se-Ran, Leuze, Michael, Ussery, David, Nookaew, Intawat
הוצא לאור ב Sci Rep (2017)

Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species

מאת Wassenaar, Trudy M., Jun, Se‐Ran, Robeson, Michael, Ussery, David W.
הוצא לאור ב Microbiologyopen (2019)

Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions

מאת Sims, Gregory E., Jun, Se-Ran, Wu, Guohong A., Kim, Sung-Hou
יצא לאור 2009

Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method

מאת Wu, Guohong Albert, Jun, Se-Ran, Sims, Gregory E., Kim, Sung-Hou
יצא לאור 2009

Whole-genome phylogeny of mammals: Evolutionary information in genic and nongenic regions

מאת Sims, Gregory E., Jun, Se-Ran, Wu, Guohong Albert, Kim, Sung-Hou
יצא לאור 2009

Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution

מאת Jun, Se-Ran, Sims, Gregory E., Wu, Guohong A., Kim, Sung-Hou
יצא לאור 2009

Effects of Housing Types on Cecal Microbiota of Two Different Strains of Laying Hens During the Late Production Phase

מאת Adhikari, Bishnu, Jun, Se-Ran, Kwon, Young M., Kiess, Aaron S., Adhikari, Pratima
הוצא לאור ב Front Vet Sci (2020)

PanFP: pangenome-based functional profiles for microbial communities

מאת Jun, Se-Ran, Robeson, Michael S., Hauser, Loren J., Schadt, Christopher W., Gorin, Andrey A.
הוצא לאור ב BMC Res Notes (2015)

Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?

מאת Jun, Se-Ran, Wassenaar, Trudy M., Wanchai, Visanu, Patumcharoenpol, Preecha, Nookaew, Intawat, Ussery, David W.
הוצא לאור ב BMC Bioinformatics (2017)

Multi-Omic Analysis Reveals Different Effects of Sulforaphane on the Microbiome and Metabolome in Old Compared to Young Mice

מאת Jun, Se-Ran, Cheema, Amrita, Bose, Chhanda, Boerma, Marjan, Palade, Philip T., Carvalho, Eugenia, Awasthi, Sanjay, Singh, Sharda P.
הוצא לאור ב Microorganisms (2020)

Quality scores for 32,000 genomes

מאת Land, Miriam L, Hyatt, Doug, Jun, Se-Ran, Kora, Guruprasad H, Hauser, Loren J, Lukjancenko, Oksana, Ussery, David W
הוצא לאור ב Stand Genomic Sci (2014)

Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA

מאת Alkam, Duah, Wongsurawat, Thidathip, Jenjaroenpun, Piroon, Connor, Skylar, Hobbs, Charlotte, Wassenaar, Trudy M., Jun, Se-Ran, Nookaew, Intawat, Ussery, David
הוצא לאור ב Genome Announc (2017)

Sample storage conditions induce post-collection biases in microbiome profiles

מאת Jenkins, Samir V., Vang, Kieng B., Gies, Allen, Griffin, Robert J., Jun, Se-Ran, Nookaew, Intawat, Dings, Ruud P. M.
הוצא לאור ב BMC Microbiol (2018)

KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis

מאת Pornputtapong, Natapol, Acheampong, Daniel A., Patumcharoenpol, Preecha, Jenjaroenpun, Piroon, Wongsurawat, Thidathip, Jun, Se-Ran, Yongkiettrakul, Suganya, Chokesajjawatee, Nipa, Nookaew, Intawat
הוצא לאור ב Front Bioeng Biotechnol (2020)

Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016

מאת Alkam, Duah, Jenjaroenpun, Piroon, Wongsurawat, Thidathip, Udaondo, Zulema, Patumcharoenpol, Preecha, Robeson, Michael, Haselow, Dirk, Mason, William, Nookaew, Intawat, Ussery, David, Jun, Se-Ran
הוצא לאור ב Infect Genet Evol (2019)

Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes

מאת Cabal, Adriana, Jun, Se-Ran, Jenjaroenpun, Piroon, Wanchai, Visanu, Nookaew, Intawat, Wongsurawat, Thidathip, Burgess, Mary J., Kothari, Atul, Wassenaar, Trudy M., Ussery, David W.
הוצא לאור ב Microb Ecol (2018)

Sulforaphane prevents age‐associated cardiac and muscular dysfunction through Nrf2 signaling

מאת Bose, Chhanda, Alves, Ines, Singh, Preeti, Palade, Philip T., Carvalho, Eugenia, Børsheim, Elisabet, Jun, Se‐Ran, Cheema, Amrita, Boerma, Marjan, Awasthi, Sanjay, Singh, Sharda P.
הוצא לאור ב Aging Cell (2020)