Assessment of genome annotation using gene function similarity within the gene neighborhood

Por Jun, Se-Ran, Nookaew, Intawat, Hauser, Loren, Gorin, Andrey
Publicado no BMC Bioinformatics (2017)

869. Outbreak of Vancomycin Resistant Enterococcus faecium (VREfm) in a Hematology Unit Identified Through Whole Genome Sequencing

Por Krishnan, Gayathri, Udaondo, Zulema, Jun, Se-Ran, Kothari, Atul
Publicado no Open Forum Infect Dis (2020)

Global mapping of the protein structure space and application in structure-based inference of protein function

Por Hou, Jingtong, Jun, Se-Ran, Zhang, Chao, Kim, Sung-Hou
Publicado em 2005

Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer

Por Zhang, Qian, Jun, Se-Ran, Leuze, Michael, Ussery, David, Nookaew, Intawat
Publicado no Sci Rep (2017)

Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species

Por Wassenaar, Trudy M., Jun, Se‐Ran, Robeson, Michael, Ussery, David W.
Publicado no Microbiologyopen (2019)

Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions

Por Sims, Gregory E., Jun, Se-Ran, Wu, Guohong A., Kim, Sung-Hou
Publicado em 2009

Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method

Por Wu, Guohong Albert, Jun, Se-Ran, Sims, Gregory E., Kim, Sung-Hou
Publicado em 2009

Whole-genome phylogeny of mammals: Evolutionary information in genic and nongenic regions

Por Sims, Gregory E., Jun, Se-Ran, Wu, Guohong Albert, Kim, Sung-Hou
Publicado em 2009

Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution

Por Jun, Se-Ran, Sims, Gregory E., Wu, Guohong A., Kim, Sung-Hou
Publicado em 2009

Effects of Housing Types on Cecal Microbiota of Two Different Strains of Laying Hens During the Late Production Phase

Por Adhikari, Bishnu, Jun, Se-Ran, Kwon, Young M., Kiess, Aaron S., Adhikari, Pratima
Publicado no Front Vet Sci (2020)

PanFP: pangenome-based functional profiles for microbial communities

Por Jun, Se-Ran, Robeson, Michael S., Hauser, Loren J., Schadt, Christopher W., Gorin, Andrey A.
Publicado no BMC Res Notes (2015)

Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?

Por Jun, Se-Ran, Wassenaar, Trudy M., Wanchai, Visanu, Patumcharoenpol, Preecha, Nookaew, Intawat, Ussery, David W.
Publicado no BMC Bioinformatics (2017)

Multi-Omic Analysis Reveals Different Effects of Sulforaphane on the Microbiome and Metabolome in Old Compared to Young Mice

Por Jun, Se-Ran, Cheema, Amrita, Bose, Chhanda, Boerma, Marjan, Palade, Philip T., Carvalho, Eugenia, Awasthi, Sanjay, Singh, Sharda P.
Publicado no Microorganisms (2020)

Quality scores for 32,000 genomes

Por Land, Miriam L, Hyatt, Doug, Jun, Se-Ran, Kora, Guruprasad H, Hauser, Loren J, Lukjancenko, Oksana, Ussery, David W
Publicado no Stand Genomic Sci (2014)

Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA

Por Alkam, Duah, Wongsurawat, Thidathip, Jenjaroenpun, Piroon, Connor, Skylar, Hobbs, Charlotte, Wassenaar, Trudy M., Jun, Se-Ran, Nookaew, Intawat, Ussery, David
Publicado no Genome Announc (2017)

Sample storage conditions induce post-collection biases in microbiome profiles

Por Jenkins, Samir V., Vang, Kieng B., Gies, Allen, Griffin, Robert J., Jun, Se-Ran, Nookaew, Intawat, Dings, Ruud P. M.
Publicado no BMC Microbiol (2018)

KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis

Por Pornputtapong, Natapol, Acheampong, Daniel A., Patumcharoenpol, Preecha, Jenjaroenpun, Piroon, Wongsurawat, Thidathip, Jun, Se-Ran, Yongkiettrakul, Suganya, Chokesajjawatee, Nipa, Nookaew, Intawat
Publicado no Front Bioeng Biotechnol (2020)

Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016

Por Alkam, Duah, Jenjaroenpun, Piroon, Wongsurawat, Thidathip, Udaondo, Zulema, Patumcharoenpol, Preecha, Robeson, Michael, Haselow, Dirk, Mason, William, Nookaew, Intawat, Ussery, David, Jun, Se-Ran
Publicado no Infect Genet Evol (2019)

Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes

Por Cabal, Adriana, Jun, Se-Ran, Jenjaroenpun, Piroon, Wanchai, Visanu, Nookaew, Intawat, Wongsurawat, Thidathip, Burgess, Mary J., Kothari, Atul, Wassenaar, Trudy M., Ussery, David W.
Publicado no Microb Ecol (2018)

Sulforaphane prevents age‐associated cardiac and muscular dysfunction through Nrf2 signaling

Por Bose, Chhanda, Alves, Ines, Singh, Preeti, Palade, Philip T., Carvalho, Eugenia, Børsheim, Elisabet, Jun, Se‐Ran, Cheema, Amrita, Boerma, Marjan, Awasthi, Sanjay, Singh, Sharda P.
Publicado no Aging Cell (2020)