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Comparison of Whole Genome (wg-) and Core Genome (cg-) MLST (BioNumerics(TM)) Versus SNP Variant Calling for Epidemiological Investigation of Pseudomonas aeruginosa

Whole genome sequencing (WGS) is increasingly used for epidemiological investigations of pathogens. While SNP variant calling is currently considered as the most suitable method, the choice of a representative reference genome and the isolate dependency of results limit standardization and affect re...

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Detalhes bibliográficos
Publicado no:Front Microbiol
Main Authors: Blanc, Dominique S., Magalhães, Bárbara, Koenig, Isabelle, Senn, Laurence, Grandbastien, Bruno
Formato: Artigo
Idioma:Inglês
Publicado em: Frontiers Media S.A. 2020
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Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC7387498/
https://ncbi.nlm.nih.gov/pubmed/32793169
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3389/fmicb.2020.01729
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